SMTL ID : 8qwr.1

Crystal structure of CotB2 variant V80L

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-dimer

Ligands

2 x CXS: 3-CYCLOHEXYL-1-PROPYLSULFONIC ACID(Non-covalent)

CXS.1: 5 residues within 4Å: Chain A: G.135, P.136, E.137, D.138, R.195 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:E.137, A:D.138, A:R.195 Water bridges: A:G.135, A:G.135, A:G.135 CXS.4: 4 residues within 4Å: Chain B: G.135, P.136, E.137, D.138 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:E.137, B:D.138 Water bridges: B:D.138

2 x NA: SODIUM ION(Non-functional Binders)

NA.2: 6 residues within 4Å: Chain A: T.42, L.82, W.83, S.84, Q.85, P.87 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.42, A:L.82 NA.5: 6 residues within 4Å: Chain B: T.42, L.82, W.83, S.84, Q.85, P.87 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:T.42, B:W.83

2 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.3: 6 residues within 4Å: Chain A: L.80, I.181, G.182, V.183, L.216, N.285 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:L.80, A:I.181, A:L.216 Hydrogen bonds: A:N.285 MPD.6: 7 residues within 4Å: Chain B: L.80, I.181, G.182, W.186, L.216, N.220, N.285 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:L.80, B:W.186, B:L.216 Hydrogen bonds: B:N.220, B:N.285

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Himpich, S. et al., How Can the Diterpene Synthase CotB2V80L Alter the Product Profile?. Chemcatchem (2024)

Release Date

2024-04-24

Peptides

Cyclooctat-9-en-7-ol synthase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Cyclooctat-9-en-7-ol synthase

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