SMTL ID : 8qx1.1 (1 other biounit)

Arabidopsis thaliana Phosphoenolpyruvate carboxylase PPC1 R886G mutant with bound malate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.94 Å

Oligo State

homo-tetramer

Ligands

4 x LMR: (2S)-2-hydroxybutanedioic acid(Non-covalent)

LMR.1: 11 residues within 4Å: Chain A: R.650, G.651, P.654, Q.682, M.834, K.838, L.890, R.897, L.970, Q.971, N.972 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:L.890 Hydrogen bonds: A:G.651, A:Q.682, A:L.970, A:N.972 Salt bridges: A:R.650, A:K.838, A:R.897 LMR.8: 12 residues within 4Å: Chain B: R.650, G.651, P.654, Q.682, M.834, K.838, L.890, L.894, R.897, L.970, Q.971, N.972 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:G.651, B:G.651, B:Q.682, B:L.970, B:N.972 Salt bridges: B:R.650, B:K.838, B:R.897 LMR.15: 11 residues within 4Å: Chain C: R.650, G.651, P.654, Q.682, M.834, K.838, L.890, R.897, L.970, Q.971, N.972 8 PLIP interactions: 8 interactions with chain C Hydrophobic interactions: C:L.890 Hydrogen bonds: C:G.651, C:Q.682, C:L.970, C:N.972 Salt bridges: C:R.650, C:K.838, C:R.897 LMR.22: 12 residues within 4Å: Chain D: R.650, G.651, P.654, Q.682, M.834, K.838, L.890, L.894, R.897, L.970, Q.971, N.972 8 PLIP interactions: 8 interactions with chain D Hydrogen bonds: D:G.651, D:G.651, D:Q.682, D:L.970, D:N.972 Salt bridges: D:R.650, D:K.838, D:R.897

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 2 residues within 4Å: Chain A: Q.241, R.245 Ligand excluded by PLIP CL.9: 2 residues within 4Å: Chain B: Q.241, R.245 Ligand excluded by PLIP CL.16: 2 residues within 4Å: Chain C: Q.241, R.245 Ligand excluded by PLIP CL.23: 2 residues within 4Å: Chain D: Q.241, R.245 Ligand excluded by PLIP

20 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.3: 6 residues within 4Å: Chain A: R.264, S.438, D.441 Chain B: R.195, E.223 Ligands: PEG.4 Ligand excluded by PLIP PEG.4: 5 residues within 4Å: Chain A: E.332, G.437, S.438 Chain B: E.223 Ligands: PEG.3 Ligand excluded by PLIP PEG.5: 3 residues within 4Å: Chain A: N.324 Ligands: PEG.6, PEG.10 Ligand excluded by PLIP PEG.6: 3 residues within 4Å: Chain A: N.324, Q.325 Ligands: PEG.5 Ligand excluded by PLIP PEG.7: 4 residues within 4Å: Chain A: L.203, Y.204, K.213, D.217 Ligand excluded by PLIP PEG.10: 3 residues within 4Å: Chain B: N.324, Q.325 Ligands: PEG.5 Ligand excluded by PLIP PEG.11: 3 residues within 4Å: Chain B: L.203, K.213 Ligands: PEG.12 Ligand excluded by PLIP PEG.12: 4 residues within 4Å: Chain B: L.203, Y.204, K.213 Ligands: PEG.11 Ligand excluded by PLIP PEG.13: 8 residues within 4Å: Chain A: E.223 Chain B: R.264, E.332, I.434, G.437, S.438, D.441 Ligands: PEG.14 Ligand excluded by PLIP PEG.14: 2 residues within 4Å: Chain B: R.264 Ligands: PEG.13 Ligand excluded by PLIP PEG.17: 6 residues within 4Å: Chain C: R.264, S.438, D.441 Chain D: R.195, E.223 Ligands: PEG.18 Ligand excluded by PLIP PEG.18: 5 residues within 4Å: Chain C: E.332, G.437, S.438 Chain D: E.223 Ligands: PEG.17 Ligand excluded by PLIP PEG.19: 3 residues within 4Å: Chain C: N.324 Ligands: PEG.20, PEG.24 Ligand excluded by PLIP PEG.20: 3 residues within 4Å: Chain C: N.324, Q.325 Ligands: PEG.19 Ligand excluded by PLIP PEG.21: 4 residues within 4Å: Chain C: L.203, Y.204, K.213, D.217 Ligand excluded by PLIP PEG.24: 3 residues within 4Å: Chain D: N.324, Q.325 Ligands: PEG.19 Ligand excluded by PLIP PEG.25: 3 residues within 4Å: Chain D: L.203, K.213 Ligands: PEG.26 Ligand excluded by PLIP PEG.26: 4 residues within 4Å: Chain D: L.203, Y.204, K.213 Ligands: PEG.25 Ligand excluded by PLIP PEG.27: 8 residues within 4Å: Chain C: E.223 Chain D: R.264, E.332, I.434, G.437, S.438, D.441 Ligands: PEG.28 Ligand excluded by PLIP PEG.28: 2 residues within 4Å: Chain D: R.264 Ligands: PEG.27 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Meyer, T.J. et al., Amino acid changes that deregulate PHOSPHOENOLPYRUVATE CARBOXYLASE in plants. To Be Published

Release Date

2024-10-30

Peptides

Phosphoenolpyruvate carboxylase 1: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Phosphoenolpyruvate carboxylase 1

Related Entries With Identical Sequence