SMTL ID : 8qzf.1

Heme-domain BM3 mutant T268E

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

2 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 25 residues within 4Å: Chain A: K.70, L.76, L.87, F.88, W.97, F.108, F.262, A.265, E.269, T.270, L.323, T.328, A.329, F.332, P.393, F.394, G.395, R.399, A.400, C.401, I.402, G.403, F.406, A.407 Ligands: IMD.2 18 PLIP interactions: 18 interactions with chain A, Hydrophobic interactions: A:F.88, A:F.88, A:F.108, A:F.262, A:A.265, A:E.269, A:L.323, A:F.394, A:I.402, A:F.406 Water bridges: A:K.70, A:K.70, A:S.333, A:S.333, A:S.333 Salt bridges: A:K.70, A:R.399 Metal complexes: A:C.401 HEM.5: 25 residues within 4Å: Chain B: K.70, L.76, L.87, F.88, W.97, F.108, I.154, F.262, A.265, E.269, T.270, L.273, T.328, A.329, F.332, P.393, F.394, G.395, R.399, A.400, C.401, I.402, G.403, A.407 Ligands: IMD.6 23 PLIP interactions: 23 interactions with chain B, Hydrophobic interactions: B:L.87, B:F.88, B:F.88, B:F.88, B:F.108, B:I.154, B:F.262, B:F.262, B:A.265, B:E.269, B:L.273, B:F.394, B:I.402 Hydrogen bonds: B:R.399 Water bridges: B:K.70, B:K.70, B:S.333, B:S.333, B:S.333, B:Q.398 Salt bridges: B:K.70, B:R.399 Metal complexes: B:C.401

2 x IMD: IMIDAZOLE(Non-covalent)

IMD.2: 4 residues within 4Å: Chain A: F.88, A.265, E.269 Ligands: HEM.1 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.269 IMD.6: 4 residues within 4Å: Chain B: F.88, A.265, E.269 Ligands: HEM.5 No protein-ligand interaction detected (PLIP)

1 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.3: 9 residues within 4Å: Chain A: W.131, E.132, L.134, N.135, A.136, F.422, A.449, K.450, S.451 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.132, A:N.135, A:S.451 Water bridges: A:A.449, A:K.453

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.4: 1 residues within 4Å: Chain A: L.456 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:L.456

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.7: 3 residues within 4Å: Chain B: K.130, L.134, E.138 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:E.138 Water bridges: B:K.130

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Aschenbrenner, J.C. et al., Revisiting strategies and their combinatorial effect for introducing peroxygenase activity in CYP102A1 (P450BM3). Mol Catal (2024)

Release Date

2024-04-03

Peptides

Bifunctional cytochrome P450/NADPH--P450 reductase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Bifunctional cytochrome P450/NADPH--P450 reductase