- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-14-mer
- Ligands
- 14 x VSZ: Cystargolide A (bound)(Covalent)
- 13 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.2: 3 residues within 4Å:- Chain A: I.30, Y.62, Y.64
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:Y.64
- Water bridges: A:Y.64
EDO.3: 5 residues within 4Å:- Chain A: S.99, M.100, H.124, L.151
- Ligands: VSZ.1
2 PLIP interactions:2 interactions with chain A- Water bridges: A:H.124, A:H.124
EDO.5: 5 residues within 4Å:- Chain B: S.99, M.100, H.124, L.151
- Ligands: VSZ.4
1 PLIP interactions:1 interactions with chain B- Water bridges: B:H.124
EDO.8: 6 residues within 4Å:- Chain D: S.99, M.100, H.124, Q.125, P.126
- Ligands: VSZ.7
3 PLIP interactions:3 interactions with chain D- Water bridges: D:H.124, D:H.124, D:N.152
EDO.10: 6 residues within 4Å:- Chain E: S.99, M.100, H.124, P.126, L.151
- Ligands: VSZ.9
4 PLIP interactions:4 interactions with chain E- Hydrogen bonds: E:S.99
- Water bridges: E:H.124, E:H.124, E:N.152
EDO.12: 3 residues within 4Å:- Chain F: I.30, Y.62, Y.64
1 PLIP interactions:1 interactions with chain F- Hydrogen bonds: F:Y.64
EDO.13: 7 residues within 4Å:- Chain F: S.99, M.100, H.124, Q.125, P.126, L.151
- Ligands: VSZ.11
4 PLIP interactions:4 interactions with chain F- Hydrogen bonds: F:S.99
- Water bridges: F:H.124, F:H.124, F:N.152
EDO.14: 5 residues within 4Å:- Chain F: K.146, E.149, K.150, R.153
- Chain G: T.177
3 PLIP interactions:3 interactions with chain F- Hydrogen bonds: F:E.149, F:E.149, F:R.153
EDO.16: 7 residues within 4Å:- Chain G: S.99, M.100, H.124, Q.125, P.126, L.151
- Ligands: VSZ.15
4 PLIP interactions:4 interactions with chain G- Hydrogen bonds: G:S.99
- Water bridges: G:H.124, G:H.124, G:N.152
EDO.20: 6 residues within 4Å:- Chain J: S.99, M.100, F.103, H.124, L.151
- Ligands: VSZ.19
1 PLIP interactions:1 interactions with chain J- Water bridges: J:H.124
EDO.22: 5 residues within 4Å:- Chain K: S.99, M.100, H.124, L.155
- Ligands: VSZ.21
1 PLIP interactions:1 interactions with chain K- Hydrogen bonds: K:S.99
EDO.24: 8 residues within 4Å:- Chain L: S.99, M.100, F.103, H.124, Q.125, P.126, L.151
- Ligands: VSZ.23
2 PLIP interactions:2 interactions with chain L- Water bridges: L:H.124, L:Q.125
EDO.26: 5 residues within 4Å:- Chain M: S.99, M.100, H.124, L.151
- Ligands: VSZ.25
2 PLIP interactions:2 interactions with chain M- Water bridges: M:H.124, M:H.124
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Illigmann, A. et al., Structure of Staphylococcus aureus ClpP Bound to the Covalent Active-Site Inhibitor Cystargolide A. Angew.Chem.Int.Ed.Engl. (2024)
- Release Date
- 2023-12-20
- Peptides
- ATP-dependent Clp protease proteolytic subunit: ABCDEFGHIJKLMN
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
GH
HI
IJ
JK
KL
LM
MN
N
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-14-mer
- Ligands
- 14 x VSZ: Cystargolide A (bound)(Covalent)
- 13 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Illigmann, A. et al., Structure of Staphylococcus aureus ClpP Bound to the Covalent Active-Site Inhibitor Cystargolide A. Angew.Chem.Int.Ed.Engl. (2024)
- Release Date
- 2023-12-20
- Peptides
- ATP-dependent Clp protease proteolytic subunit: ABCDEFGHIJKLMN
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
GH
HI
IJ
JK
KL
LM
MN
N