SMTL ID : 8r0j.1 (1 other biounit)

Crystal structure of the retromer complex VPS29/VPS35 with the ligand bis-1,3-phenyl guanylhydrazone, 2a

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

hetero-1-1-mer

Ligands

1 x XFZ: Bis-1,3-phenyl guanylhydrazon(Non-covalent)

XFZ.1: 9 residues within 4Å: Chain B: E.101, L.102, A.103, E.104, L.105, E.143, S.145, D.146, A.149 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:E.104 Hydrogen bonds: B:A.103, B:E.104, B:L.105 Salt bridges: B:E.104, B:D.146

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fagnani, E. et al., Stabilization of the retromer complex: Analysis of novel binding sites of bis-1,3-phenyl guanylhydrazone 2a to the VPS29/VPS35 interface. Comput Struct Biotechnol J (2024)

Release Date

2024-03-27

Peptides

Vacuolar protein sorting-associated protein 29: A
Vacuolar protein sorting-associated protein 35: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

Vacuolar protein sorting-associated protein 29

Vacuolar protein sorting-associated protein 35

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