SMTL ID : 8r2t.1

Crystal structure of 4-hydroxybenzoate-1-hydroxylase from Gelatoporia subvermispora (GsMNX1)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.82 Å

Oligo State

homo-dimer

Ligands

2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 29 residues within 4Å: Chain A: V.28, G.29, G.31, M.32, G.33, L.51, E.52, Q.53, I.64, Q.65, R.125, A.146, T.147, V.148, A.174, D.175, G.176, F.180, R.201, W.292, G.314, D.315, P.322, A.325, Q.326, G.327, A.328, A.329 Ligands: CL.2 30 PLIP interactions: 30 interactions with chain A Hydrophobic interactions: A:P.322 Hydrogen bonds: A:G.31, A:G.33, A:Q.53, A:Q.53, A:Q.65, A:Q.65, A:R.125, A:R.125, A:V.148, A:V.148, A:D.175, A:D.315, A:G.327, A:A.328, A:A.329 Water bridges: A:M.32, A:M.32, A:G.34, A:G.176, A:V.177, A:V.177, A:F.180, A:F.180, A:R.201, A:Y.237, A:D.315, A:D.315, A:A.331 pi-Cation interactions: A:R.125 FAD.3: 30 residues within 4Å: Chain B: V.28, G.29, C.30, G.31, M.32, G.33, G.34, L.51, E.52, Q.53, I.64, Q.65, R.125, A.146, T.147, V.148, A.174, D.175, G.176, R.201, W.292, G.314, D.315, P.322, A.325, Q.326, G.327, A.328, A.329 Ligands: CL.4 25 PLIP interactions: 25 interactions with chain B Hydrophobic interactions: B:P.322 Hydrogen bonds: B:C.30, B:G.31, B:G.33, B:G.34, B:Q.53, B:Q.53, B:Q.65, B:Q.65, B:R.125, B:R.125, B:V.148, B:V.148, B:D.315, B:G.327, B:A.328, B:A.329 Water bridges: B:M.32, B:M.32, B:G.176, B:V.177, B:V.177, B:R.201, B:D.315, B:D.315

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 5 residues within 4Å: Chain A: P.322, A.325, Q.326, G.327 Ligands: FAD.1 Ligand excluded by PLIP CL.4: 5 residues within 4Å: Chain B: P.322, A.325, Q.326, G.327 Ligands: FAD.3 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kuatsjah, E. et al., Biochemical and structural characterization of enzymes in the 4-hydroxybenzoate catabolic pathway of lignin-degrading white-rot fungi. Cell Rep (2024)

Release Date

2024-11-13

Peptides

FAD-binding domain-containing protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

FAD-binding domain-containing protein