SMTL ID : 8r39.1

Full-length LpMIP mutant Y16F

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-dimer

Ligands

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 8 residues within 4Å: Chain A: Y.126, D.137, F.148, V.153, I.154, W.157, Y.180, F.197 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.126, A:D.137, A:I.154 GOL.2: 7 residues within 4Å: Chain A: Q.152, V.153, I.154, P.155, A.179, Y.180, R.183 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.152, A:R.183 GOL.6: 5 residues within 4Å: Chain A: I.13, L.17 Chain B: L.17, N.20, F.21 No protein-ligand interaction detected (PLIP) GOL.8: 8 residues within 4Å: Chain B: Y.126, D.137, F.148, V.153, I.154, W.157, Y.180, F.197 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Y.126, B:D.137, B:I.154 GOL.9: 7 residues within 4Å: Chain B: Q.152, V.153, I.154, P.155, A.179, Y.180, R.183 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Q.152, B:R.183 GOL.13: 5 residues within 4Å: Chain A: L.17, N.20, F.21 Chain B: I.13, L.17 No protein-ligand interaction detected (PLIP)

2 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.3: 6 residues within 4Å: Chain A: K.118, P.155, T.158, E.159, Q.162 Ligands: PEG.4 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.159 Salt bridges: A:E.159 MES.10: 6 residues within 4Å: Chain B: K.118, P.155, T.158, E.159, Q.162 Ligands: PEG.11 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:E.159 Water bridges: B:E.159 Salt bridges: B:E.159

4 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.4: 5 residues within 4Å: Chain A: K.118, S.151, P.155, T.158 Ligands: MES.3 No protein-ligand interaction detected (PLIP) PEG.5: 3 residues within 4Å: Chain A: D.5, K.8 Chain B: K.59 No protein-ligand interaction detected (PLIP) PEG.11: 5 residues within 4Å: Chain B: K.118, S.151, P.155, T.158 Ligands: MES.10 No protein-ligand interaction detected (PLIP) PEG.12: 3 residues within 4Å: Chain A: K.59 Chain B: D.5, K.8 No protein-ligand interaction detected (PLIP)

2 x NA: SODIUM ION(Non-functional Binders)

NA.7: 4 residues within 4Å: Chain A: K.106, R.129, E.171, Y.173 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.171 NA.14: 4 residues within 4Å: Chain B: K.106, R.129, E.171, Y.173 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:E.171

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Whittaker, J.J. et al., Full-length LpMIP mutant Y16F. To Be Published

Release Date

2024-11-20

Peptides

Peptidyl-prolyl cis-trans isomerase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
C

Peptidyl-prolyl cis-trans isomerase