SMTL ID : 8r4d.1

Focused map on the Roc-COR domains of the Roco protein from C. tepidum in the GTP state bound to the activating Nanobody NbRoco1

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-mer

Ligands

1 x GSP: 5'-GUANOSINE-DIPHOSPHATE-MONOTHIOPHOSPHATE(Non-covalent)

GSP.1: 10 residues within 4Å: Chain A: G.464, D.465, G.469, K.470, T.471, F.521, G.522, G.523, K.575, C.605 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:D.465, A:G.469, A:K.470, A:T.471, A:G.523 Salt bridges: A:K.575

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Galicia, C. et al., Structural insights into the GTP-driven monomerization and activation of a bacterial LRRK2 homolog using allosteric nanobodies. Elife (2024)

Release Date

2024-05-01

Peptides

Rab family protein: A
NbRoco1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Rab family protein

NbRoco1

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