SMTL ID : 8r4p.1

Structure of BabA from Helicobacter pylori strain 17875

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

10 x CD: CADMIUM ION(Non-covalent)(Non-functional Binders)

CD.1: 2 residues within 4Å: Chain A: D.53, E.56 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.53, A:E.56, A:E.56, H2O.7 CD.2: 2 residues within 4Å: Chain A: N.94, D.98 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.98, A:D.98, H2O.6 CD.3: 1 residues within 4Å: Chain A: E.198 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.198, A:E.198, H2O.4 CD.4: 1 residues within 4Å: Chain A: G.276 No protein-ligand interaction detected (PLIP) CD.5: 2 residues within 4Å: Chain A: E.325, T.403 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.325, A:E.325, H2O.1, H2O.6 CD.6: 1 residues within 4Å: Chain A: E.339 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.339, A:E.339 CD.7: 1 residues within 4Å: Chain A: H.350 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.350 CD.8: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) CD.9: 2 residues within 4Å: Chain A: H.391, N.456 No protein-ligand interaction detected (PLIP) CD.10: 2 residues within 4Å: Chain A: E.449, T.453 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Persson, K. et al., Structure of BabA from Helicobacter pylori strain 17875. To Be Published

Release Date

2024-11-20

Peptides

Adhesin binding fucosylated histo-blood group antigen: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Adhesin binding fucosylated histo-blood group antigen