SMTL ID : 8r54.1

Mouse teneurin-3 non-compact subunit - A0B0 isoform

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

monomer

Ligands

7 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 6 residues within 4Å: Chain A: N.1953, S.1955, S.1956, D.2020, F.2021 Ligands: NAG-NAG.8 No protein-ligand interaction detected (PLIP) NAG-NAG.4: 6 residues within 4Å: Chain A: D.1320, Y.1321, N.1329, N.1339, Q.2195, Q.2199 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.413 NAG-NAG.5: 3 residues within 4Å: Chain A: A.522, I.1215, N.1216 No protein-ligand interaction detected (PLIP) NAG-NAG.6: 4 residues within 4Å: Chain A: N.1610, L.1629, E.2231, G.2232 No protein-ligand interaction detected (PLIP) NAG-NAG.7: 3 residues within 4Å: Chain A: A.1812, N.1813, F.2015 No protein-ligand interaction detected (PLIP) NAG-NAG.8: 3 residues within 4Å: Chain A: N.2018, D.2020 Ligands: NAG-NAG.1 No protein-ligand interaction detected (PLIP) NAG-NAG.9: 2 residues within 4Å: Chain A: N.572, Y.583 No protein-ligand interaction detected (PLIP)

2 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.2: 5 residues within 4Å: Chain A: Y.1221, Y.1230, N.1233, T.1246, D.1247 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:Y.1230 NAG-NAG-BMA.3: 3 residues within 4Å: Chain A: N.1424, T.1426, L.1435 No protein-ligand interaction detected (PLIP)

4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.10: 2 residues within 4Å: Chain A: L.1498, N.1509 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.1509 NAG.11: 4 residues within 4Å: Chain A: R.2257, G.2263, N.2265, F.2289 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:F.2289 Hydrogen bonds: A:R.2257, A:R.2257, A:G.2263 NAG.12: 2 residues within 4Å: Chain A: G.854, N.891 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.855 NAG.13: 2 residues within 4Å: Chain A: N.1366, F.1373 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:F.1373

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gogou, C. et al., Alternative splicing controls teneurin-3 compact dimer formation for neuronal recognition. Nat Commun (2024)

Release Date

2024-05-08

Peptides

Teneurin-3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Teneurin-3