SMTL ID : 8r5b.1

Crystal structure of human TRIM7 PRYSPRY domain bound to (3-phenoxybenzoyl)-L-glutamine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

homo-dimer

Ligands

2 x Y32: (2~{S})-5-azanyl-5-oxidanylidene-2-[(3-phenoxyphenyl)carbonylamino]pentanoic acid

Y32.1: 16 residues within 4Å: Chain A: R.18, T.46, N.47, T.48, R.49, G.72, W.73, A.74, L.87, F.90, Q.100, S.163, V.164, C.165 Chain B: S.111, P.112 15 PLIP interactions: 13 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:T.48, A:A.74, A:L.87, A:F.90, B:P.112, B:P.112 Hydrogen bonds: A:T.48, A:G.72, A:S.163, A:C.165 Water bridges: A:N.47, A:N.47, A:T.88, A:F.90 Salt bridges: A:R.49 Y32.2: 16 residues within 4Å: Chain A: S.111, P.112 Chain B: R.18, T.46, N.47, T.48, R.49, G.72, W.73, A.74, L.87, F.90, Q.100, S.163, V.164, C.165 15 PLIP interactions: 14 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:T.48, B:A.74, B:L.87, B:F.90, A:P.112 Hydrogen bonds: B:T.48, B:S.163, B:S.163, B:C.165 Water bridges: B:N.47, B:N.47, B:T.88, B:F.90, B:N.102 Salt bridges: B:R.49

2 x ACY: ACETIC ACID(Non-functional Binders)

ACY.3: 6 residues within 4Å: Chain B: S.22, G.27, V.28, R.29, Y.170, L.171 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:Y.170 Water bridges: B:R.29, B:R.29 ACY.4: 2 residues within 4Å: Chain B: E.142, D.143 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Munoz Sosa, C.J. et al., Crystal structure of human TRIM7 PRYSPRY domain bound to (3-phenoxybenzoyl)-L-glutamine. To Be Published

Release Date

2024-01-17

Peptides

E3 ubiquitin-protein ligase TRIM7: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

E3 ubiquitin-protein ligase TRIM7

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