SMTL ID : 8r74.1

Galectin-1 in complex with thiogalactoside derivative

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.54 Å

Oligo State

homo-dimer

Ligands

2 x YBC: (2~{R},3~{R},4~{S},5~{R},6~{R})-2-(3,4-dichlorophenyl)sulfanyl-6-(hydroxymethyl)-4-[4-(2-oxidanyl-1,3-thiazol-4-yl)-1,2,3-triazol-1-yl]oxane-3,5-diol(Non-covalent)

YBC.1: 15 residues within 4Å: Chain A: S.30, F.31, V.32, H.45, N.47, R.49, H.53, V.60, N.62, W.69, G.70, E.72, D.124, G.125, D.126 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:S.30, A:S.30, A:H.45, A:N.47, A:R.49, A:H.53, A:N.62 Water bridges: A:R.49, A:H.53 pi-Cation interactions: A:H.45 YBC.2: 14 residues within 4Å: Chain B: S.30, F.31, V.32, H.45, N.47, R.49, H.53, V.60, N.62, W.69, G.70, E.72, D.124, G.125 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:S.30, B:H.45, B:R.49, B:H.53, B:N.62, B:E.72 Water bridges: B:R.49, B:H.53, B:W.69

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zetterberg, F.R. et al., Discovery of the Selective and Orally Available Galectin-1 Inhibitor GB1908 as a Potential Treatment for Lung Cancer. J.Med.Chem. (2024)

Release Date

2024-06-05

Peptides

Galectin-1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Galectin-1

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