SMTL ID : 8r79.1

The D2 domain of human DTX3L

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.18 Å

Oligo State

homo-tetramer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: K.8, I.9, F.10 Chain D: H.60 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain D Hydrogen bonds: A:I.9, A:F.10, A:F.10 Salt bridges: D:H.60 SO4.2: 6 residues within 4Å: Chain B: Q.7, K.8, I.9, F.10, F.53 Chain C: H.60 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain C Hydrogen bonds: B:I.9, B:F.10 Salt bridges: C:H.60 SO4.3: 5 residues within 4Å: Chain B: H.60 Chain C: K.8, I.9, F.10, F.53 4 PLIP interactions: 3 interactions with chain C, 1 interactions with chain B Hydrogen bonds: C:I.9, C:F.10, C:F.10 Salt bridges: B:H.60 SO4.4: 5 residues within 4Å: Chain A: H.60 Chain D: K.8, I.9, F.10, F.53 5 PLIP interactions: 4 interactions with chain D, 1 interactions with chain A Hydrogen bonds: D:I.9, D:F.10, D:F.53 Salt bridges: D:K.8, A:H.60

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vela-Rodriguez, C. et al., Oligomerisation mediated by the D2 domain of DTX3L is critical for DTX3L-PARP9 reading function of mono-ADP-ribosylated androgen receptor. Biorxiv (2023)

Release Date

2023-12-27

Peptides

E3 ubiquitin-protein ligase DTX3L: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E3 ubiquitin-protein ligase DTX3L