SMTL ID : 8r8d.1

Cryo-EM structure of coagulation factor beta-XIIa in complex with the garadacimab Fab fragment (symmetric dimer)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-2-mer

Ligands

2 x NAG- NAG- BMA- MAN- MAN- FUC: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-MAN-FUC.1: 14 residues within 4Å: Chain A: Y.19, G.21, H.22, E.49, D.50, T.52, V.54, Q.57, N.61, H.62, S.63, T.69, A.71 Ligands: NAG-NAG-BMA-MAN-MAN-FUC.2 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.22 NAG-NAG-BMA-MAN-MAN-FUC.2: 14 residues within 4Å: Chain F: Y.19, G.21, H.22, E.49, D.50, T.52, V.54, Q.57, N.61, H.62, S.63, T.69, A.71 Ligands: NAG-NAG-BMA-MAN-MAN-FUC.1 1 PLIP interactions: 1 interactions with chain F Hydrogen bonds: F:H.22

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Drulyte, I. et al., Structural basis for the inhibition of beta FXIIa by garadacimab. Structure (2024)

Release Date

2023-12-13

Peptides

Coagulation factor XII: AF
Garadacimab heavy chain variable region: BD
Garadacimab light chain variable region: CE

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

F
A

B
E

D
H

C
I

E
L

Coagulation factor XII

Garadacimab heavy chain variable region

Garadacimab light chain variable region