SMTL ID : 8r8q.1

Lysosomal peptide transporter

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-mer

Ligands

5 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 2 residues within 4Å: Chain B: N.85, S.113 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:S.113 NAG.2: 3 residues within 4Å: Chain B: P.52, N.157, T.159 No protein-ligand interaction detected (PLIP) NAG.3: 1 residues within 4Å: Chain B: N.228 No protein-ligand interaction detected (PLIP) NAG.4: 4 residues within 4Å: Chain B: E.235, H.304, A.329, N.331 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:E.235 NAG.5: 3 residues within 4Å: Chain B: N.94, S.96, L.97 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:L.97 Hydrogen bonds: B:S.96

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jungnickel, K.E.J. et al., MFSD1 with its accessory subunit GLMP functions as a general dipeptide uniporter in lysosomes. Nat.Cell Biol. (2024)

Release Date

2024-05-01

Peptides

Major facilitator superfamily domain-containing protein 1: A
Glycosylated lysosomal membrane protein: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Membrane

We predict this structure to be a membrane protein.
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Major facilitator superfamily domain-containing protein 1

Glycosylated lysosomal membrane protein