SMTL ID : 8r8u.1

Human PADI4 in complex with cyclic peptide PADI4_3

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-mer

Ligands

10 x CA: CALCIUM ION(Non-covalent)

CA.1: 5 residues within 4Å: Chain A: Q.356, E.360, F.414, L.417, E.418 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:E.360, A:F.414, A:L.417, A:E.418 CA.2: 6 residues within 4Å: Chain A: N.160, D.162, D.164, D.172, D.183, D.186 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.162, A:D.164, A:D.172, A:D.183, A:D.186 CA.3: 4 residues within 4Å: Chain A: D.162, D.164, D.186, D.395 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.164, A:D.164, A:D.186, A:D.186, A:D.395 CA.4: 5 residues within 4Å: Chain A: E.358, D.376, S.377, R.379, N.380 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:E.358, A:D.376, A:S.377, A:R.379 CA.5: 4 residues within 4Å: Chain A: D.172, D.175, E.177, D.183 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.172, A:D.175, A:E.177 CA.6: 5 residues within 4Å: Chain D: Q.356, E.360, F.414, L.417, E.418 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:E.360, D:F.414, D:L.417, D:E.418 CA.7: 6 residues within 4Å: Chain D: N.160, D.162, D.164, D.172, D.183, D.186 5 PLIP interactions: 5 interactions with chain D Metal complexes: D:D.162, D:D.164, D:D.172, D:D.183, D:D.186 CA.8: 4 residues within 4Å: Chain D: D.162, D.164, D.186, D.395 5 PLIP interactions: 5 interactions with chain D Metal complexes: D:D.164, D:D.164, D:D.186, D:D.186, D:D.395 CA.9: 5 residues within 4Å: Chain D: E.358, D.376, S.377, R.379, N.380 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:E.358, D:D.376, D:S.377, D:R.379 CA.10: 4 residues within 4Å: Chain D: D.172, D.175, E.177, D.183 3 PLIP interactions: 3 interactions with chain D Metal complexes: D:D.172, D:D.175, D:E.177

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bertran, M.T. et al., A cyclic peptide toolkit reveals mechanistic principles of peptidylarginine deiminase IV regulation. Nat Commun (2024)

Release Date

2024-11-27

Peptides

Protein-arginine deiminase type-4: AD
Cyclic Peptide PADI4_3: BC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

D
B

B
D

C
C

Protein-arginine deiminase type-4

Cyclic Peptide PADI4_3

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