SMTL ID : 8r9b.2 (3 other biounits)

A soakable crystal form of human CDK7 in complex with AMP-PNP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.21 Å

Oligo State

monomer

Ligands

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 3 residues within 4Å: Chain A: H.155, Q.156, W.158 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.156

1 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)

ANP.2: 22 residues within 4Å: Chain A: L.44, G.45, E.46, G.47, Q.48, F.49, A.50, V.52, A.65, K.67, I.101, F.117, D.118, F.119, M.120, D.123, N.167, N.168, L.170, D.181, A.185 Ligands: MG.3 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:L.44, A:Q.48, A:F.49, A:A.50, A:K.67, A:D.118, A:M.120, A:D.123, A:D.181 Salt bridges: A:K.67

1 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 4 residues within 4Å: Chain A: N.167, N.168, D.181 Ligands: ANP.2 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.181

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mukherjee, M. et al., Protein engineering enables a soakable crystal form of human CDK7 primed for high-throughput crystallography and structure-based drug design. Structure (2024)

Release Date

2024-05-29

Peptides

Cyclin-dependent kinase 7: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Cyclin-dependent kinase 7

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