SMTL ID : 8rao.1

Structure of Sen1-ADP.BeF3-RNA complex

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

monomer

Ligands

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 18 residues within 4Å: Chain A: K.1334, L.1335, Q.1339, P.1359, G.1360, T.1361, G.1362, K.1363, T.1364, K.1365, R.1422, Y.1655, R.1656, G.1785, E.1787, R.1820 Ligands: MG.2, BEF.3 20 PLIP interactions: 20 interactions with chain A Hydrogen bonds: A:K.1334, A:Q.1339, A:G.1360, A:G.1362, A:K.1363, A:T.1364, A:T.1364, A:K.1365, A:K.1365, A:R.1422, A:R.1422, A:E.1787 Salt bridges: A:K.1363, A:R.1422, A:R.1656, A:R.1656, A:R.1820 pi-Stacking: A:Y.1655 pi-Cation interactions: A:K.1365, A:K.1365

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 6 residues within 4Å: Chain A: K.1363, T.1364, D.1590, E.1591 Ligands: ADP.1, BEF.3 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:T.1364

1 x BEF: BERYLLIUM TRIFLUORIDE ION(Non-covalent)

BEF.3: 11 residues within 4Å: Chain A: G.1357, P.1358, P.1359, K.1363, E.1591, Q.1619, R.1656, G.1785, R.1820 Ligands: ADP.1, MG.2 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rengachari, S. et al., Mechanism of polyadenylation-independent RNA polymerase II termination. Nat.Struct.Mol.Biol. (2024)

Release Date

2024-10-30

Peptides

Helicase SEN1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
O

Helicase SEN1

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