SMTL ID : 8rbg.1

CryoEM structure of primed myosin-5a (ADP-Pi state)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

monomer

Ligands

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 11 residues within 4Å: Chain A: S.165, G.166, K.169, T.170, N.214, A.217, S.218, Y.439, G.440 Ligands: MG.2, ADP.3 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:G.166, A:N.214, A:S.218, A:S.218, A:R.219, A:G.440 Salt bridges: A:K.169

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 6 residues within 4Å: Chain A: K.169, T.170, N.214, S.218 Ligands: PO4.1, ADP.3 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:T.170, A:S.218

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.3: 14 residues within 4Å: Chain A: N.111, P.112, E.114, Y.119, S.165, G.166, A.167, G.168, K.169, T.170, V.171, N.214 Ligands: PO4.1, MG.2 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:N.111, A:Y.113, A:E.114, A:Y.119, A:Y.119, A:G.166, A:G.168, A:K.169, A:T.170, A:T.170, A:V.171, A:N.214 Salt bridges: A:K.169

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Klebl, D.P. et al., Swinging lever mechanism of myosin directly demonstrated by time-resolved cryoEM. To Be Published

Release Date

2024-12-11

Peptides

Unconventional myosin-Va: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Unconventional myosin-Va

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