SMTL ID : 8rby.1

The crystal structure of the SARS-CoV-2 receptor binding domain in complex with the neutralizing nanobody 1.26

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

hetero-1-1-mer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 4 residues within 4Å: Chain A: F.9, G.10, N.14, V.38 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:V.38 Hydrogen bonds: A:N.14 Water bridges: A:G.10

1 x MPO: 3[N-MORPHOLINO]PROPANE SULFONIC ACID(Non-covalent)

MPO.2: 2 residues within 4Å: Chain A: T.16, R.17 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Casasnovas, J.M. et al., The crystal structure of the SARS-CoV-2 receptor binding domain in complex with the neutralizing nanobody 1.26. To Be Published

Release Date

2024-12-11

Peptides

Spike protein S1: A
Camel-derived nanobody 1.26: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Spike protein S1

Camel-derived nanobody 1.26

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