SMTL ID : 8rcu.1

human TRPM4 in SMA IBA

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-tetramer

Ligands

4 x 01: 4-chloranyl-2-[2-(3-iodanylphenoxy)ethanoylamino]benzoic acid

01.1: 2 residues within 4Å: Chain A: W.444, S.504 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:W.444 Hydrogen bonds: A:S.504 01.5: 2 residues within 4Å: Chain B: W.444, S.504 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:W.444 Hydrogen bonds: B:S.504 01.8: 2 residues within 4Å: Chain C: W.444, S.504 2 PLIP interactions: 2 interactions with chain C Hydrophobic interactions: C:W.444 Hydrogen bonds: C:S.504 01.10: 2 residues within 4Å: Chain D: W.444, S.504 2 PLIP interactions: 2 interactions with chain D Hydrophobic interactions: D:W.444 Hydrogen bonds: D:S.504

8 x CLR: CHOLESTEROL(Non-covalent)(Covalent)

CLR.2: 13 residues within 4Å: Chain A: L.514, L.517, G.518, L.521, P.540, L.543, R.544, F.547, Y.548, Y.551 Chain C: W.598, V.601, V.605 8 PLIP interactions: 5 interactions with chain A, 3 interactions with chain C Hydrophobic interactions: A:L.517, A:L.521, A:L.543, A:Y.548, A:Y.551, C:W.598, C:V.601, C:V.605 CLR.3: 15 residues within 4Å: Chain A: L.371, L.374, L.375, S.378, R.379, L.382, V.383, F.479 Chain C: V.522, V.526, S.537, F.539, I.542, V.546, F.547 10 PLIP interactions: 4 interactions with chain C, 6 interactions with chain A Hydrophobic interactions: C:V.522, C:F.539, C:F.539, C:I.542, A:L.375, A:L.375, A:R.379, A:R.379, A:L.382, A:V.383 CLR.4: 13 residues within 4Å: Chain A: V.522, V.526, F.539, I.542, F.547 Chain B: L.371, L.374, L.375, S.378, R.379, L.382, V.383, F.479 7 PLIP interactions: 4 interactions with chain B, 3 interactions with chain A Hydrophobic interactions: B:L.374, B:L.375, B:L.382, B:V.383, A:F.539, A:F.539, A:I.542 CLR.6: 9 residues within 4Å: Chain A: W.598, V.601, V.605 Chain B: L.521, P.540, L.543, F.547, Y.548, Y.551 6 PLIP interactions: 2 interactions with chain A, 4 interactions with chain B Hydrophobic interactions: A:W.598, A:V.601, B:L.521, B:P.540, B:L.543, B:Y.551 CLR.7: 10 residues within 4Å: Chain B: W.598, V.601, V.605 Chain D: L.521, P.540, L.543, R.544, F.547, Y.548, Y.551 7 PLIP interactions: 5 interactions with chain D, 2 interactions with chain B Hydrophobic interactions: D:P.540, D:P.540, D:L.543, D:Y.548, D:Y.551, B:W.598, B:V.601 CLR.9: 10 residues within 4Å: Chain C: L.521, P.540, L.543, R.544, F.547, Y.548, Y.551 Chain D: W.598, V.601, V.605 7 PLIP interactions: 5 interactions with chain C, 2 interactions with chain D Hydrophobic interactions: C:L.521, C:P.540, C:P.540, C:L.543, C:Y.551, D:W.598, D:V.601 CLR.11: 15 residues within 4Å: Chain C: L.371, L.374, L.375, S.378, R.379, L.382, V.383, F.479 Chain D: V.522, V.526, S.537, F.539, I.542, V.546, F.547 9 PLIP interactions: 4 interactions with chain D, 5 interactions with chain C Hydrophobic interactions: D:V.522, D:V.526, D:F.539, D:F.539, C:L.374, C:L.375, C:R.379, C:L.382, C:V.383 CLR.12: 15 residues within 4Å: Chain B: V.522, V.526, S.537, F.539, I.542, V.546, F.547 Chain D: L.371, L.374, L.375, S.378, R.379, L.382, V.383, L.486 10 PLIP interactions: 5 interactions with chain D, 5 interactions with chain B Hydrophobic interactions: D:L.371, D:L.375, D:R.379, D:L.382, D:V.383, B:V.522, B:V.526, B:F.539, B:F.539 Hydrogen bonds: B:S.537

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ekundayo, B. et al., Identification of a Binding Site for Small Molecule Inhibitors Targeting Human. To Be Published

Release Date

2024-12-18

Peptides

Transient receptor potential cation channel subfamily M member 4: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Membrane

We predict this structure to be a membrane protein.
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Transient receptor potential cation channel subfamily M member 4

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