SMTL ID : 8rcy.1

L-SIGN CRD in complex with Man84.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x CA: CALCIUM ION(Non-covalent)

CA.1: 6 residues within 4Å: Chain A: E.97, N.99, E.104, N.115, D.116 Ligands: 01.3 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:E.97, A:E.104, A:D.116, A:D.116

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 3 residues within 4Å: Chain A: S.21, N.22, S.23 Ligand excluded by PLIP

1 x 01: 1-[[1-[(2S,3S,4R,5S,6R)-2-(2-chloroethyloxy)-6-(hydroxymethyl)-4,5-bis(oxidanyl)oxan-3-yl]-1,2,3-triazol-4-yl]methyl]guanidine

01.3: 11 residues within 4Å: Chain A: F.63, E.97, N.99, S.101, E.104, E.108, N.115, D.116, N.117, N.123 Ligands: CA.1 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:N.99, A:S.101, A:E.104, A:N.115, A:N.115, A:N.117, A:N.123 Salt bridges: A:E.108

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Delaunay, C. et al., Unprecedented selectivity for homologous lectin targets: differential targeting of the viral receptors L-SIGN and DC-SIGN. Chem Sci (2024)

Release Date

2024-10-16

Peptides

C-type lectin domain family 4 member M: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C-type lectin domain family 4 member M