SMTL ID : 8rdg.1

Crystal structure of UDP-galactose 4-epimerase from Pyrococcus horikoshii with bound NAD

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

2 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.1: 29 residues within 4Å: Chain A: G.7, A.9, G.10, F.11, I.12, D.31, D.32, L.33, S.34, A.35, G.36, G.55, D.56, M.57, R.58, L.76, A.77, A.78, P.80, I.99, T.118, S.119, Y.145, K.149, L.172, A.173, N.174, I.175, H.182 25 PLIP interactions: 25 interactions with chain A Hydrophobic interactions: A:L.172 Hydrogen bonds: A:G.7, A:F.11, A:I.12, A:D.32, A:L.33, A:S.34, A:S.34, A:A.35, A:G.36, A:D.56, A:M.57, A:L.76, A:A.78, A:T.118, A:Y.145, A:K.149, A:I.175, A:I.175 Water bridges: A:G.10, A:G.13, A:R.58, A:N.181, A:N.181 Salt bridges: A:H.182 NAD.2: 31 residues within 4Å: Chain B: G.7, A.9, G.10, F.11, I.12, D.31, D.32, L.33, S.34, A.35, G.36, G.55, D.56, M.57, R.58, L.76, A.77, A.78, P.80, E.81, I.99, T.118, S.119, S.120, Y.145, K.149, L.172, A.173, N.174, I.175, H.182 27 PLIP interactions: 27 interactions with chain B Hydrophobic interactions: B:L.172 Hydrogen bonds: B:G.7, B:F.11, B:I.12, B:D.32, B:D.32, B:L.33, B:S.34, B:S.34, B:A.35, B:G.36, B:D.56, B:D.56, B:M.57, B:L.76, B:A.78, B:E.81, B:T.118, B:K.149, B:I.175, B:H.182 Water bridges: B:G.10, B:G.13, B:R.58, B:N.79, B:N.79, B:E.81

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Alvarez Quispe, C. et al., Structural, computational and biochemical analysis reveal new insights in the specificity of a promiscuous GDP-Gal4E. To Be Published

Release Date

2024-12-18

Peptides

SDR family NAD(P)-dependent oxidoreductase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

SDR family NAD(P)-dependent oxidoreductase

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