SMTL ID : 8rdx.1 (5 other biounits)

PGGtase I in complex with probe BAY-6092

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.67 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain B: D.252, C.254, H.304 Ligands: 01.4 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.252, B:D.252, B:C.254, B:H.304, H2O.1

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 5 residues within 4Å: Chain B: K.264, K.267, I.268, F.269, Q.270 Ligand excluded by PLIP

1 x DPO: DIPHOSPHATE(Non-covalent)

DPO.3: 4 residues within 4Å: Chain B: H.202, R.246, K.249, Y.255 6 PLIP interactions: 5 interactions with chain B, 1 interactions with chain A Salt bridges: B:H.202, B:R.246, B:R.246, B:K.249, B:K.249, A:K.110

1 x 01: (5~{R})-5-(2-methoxyphenyl)-9-[(2~{R})-3,3,3-tris(fluoranyl)-2-methoxy-2-phenyl-propanoyl]-3,9-diazaspiro[5.5]undecan-2-one

01.4: 15 residues within 4Å: Chain B: T.32, A.106, R.156, Y.159, C.160, Q.195, H.202, G.204, S.205, C.208, C.254, W.258, L.303, H.304 Ligands: ZN.1 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:R.156, B:Y.159, B:W.258, B:W.258 pi-Stacking: B:W.258

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Graham, K. et al., Discovery of YAP1/TAZ pathway inhibitors through phenotypic screening with potent anti-tumor activity via blockade of Rho-GTPase signaling. Cell Chem Biol (2024)

Release Date

2024-02-14

Peptides

Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha: A
Geranylgeranyl transferase type-1 subunit beta: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha

Geranylgeranyl transferase type-1 subunit beta

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