SMTL ID : 8rdy.1

Saccharomyces cerevisiae Prp43 helicase in complex with Pxr1

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-mer

Ligands

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 17 residues within 4Å: Chain A: L.130, T.155, G.156, S.157, G.158, K.159, T.160, T.161, S.192, R.196, Q.391, F.394, L.420, T.421, D.423, R.467 Ligands: MG.2 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:G.156, A:S.157, A:G.158, A:K.159, A:T.160, A:T.160, A:T.161, A:T.161, A:S.192, A:T.421 Salt bridges: A:K.159 pi-Stacking: A:F.394 pi-Cation interactions: A:R.196

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 5 residues within 4Å: Chain A: T.160, Q.184, D.252, S.419 Ligands: ADP.1 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:T.160

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Portugal Hnizda Calisto, D. et al., An inhibitory segment within G-patch activators tunes Prp43-ATPase activity during ribosome assembly. To Be Published

Release Date

2024-10-23

Peptides

Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43: A
Glutathione S-transferase class-mu 26 kDa isozyme,Protein PXR1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43

Glutathione S-transferase class-mu 26 kDa isozyme,Protein PXR1