SMTL ID : 8rex.1

CryoEM structure of mouse GARP-lTGFbeta1 in complex with a Fab fragment derived from an activating antibody.

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-4-1-2-2-mer

Ligands

3 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 7 residues within 4Å: Chain A: N.136, S.138, I.214 Chain H: N.120 Chain I: Y.53, Y.70, N.74 2 PLIP interactions: 2 interactions with chain I Hydrogen bonds: I:Y.70, I:N.74 NAG-NAG.2: 9 residues within 4Å: Chain C: N.118, N.136, S.138, D.139, I.214 Chain F: Y.53, N.74 Chain G: N.120, K.125 1 PLIP interactions: 1 interactions with chain F Hydrogen bonds: F:N.74 NAG-NAG.3: 7 residues within 4Å: Chain E: H.182, N.204, S.206, R.207, D.225, C.228, R.252 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:R.252

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.4: 5 residues within 4Å: Chain A: Y.174, N.176 Chain I: S.46, S.114, S.115 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.176 NAG.5: 6 residues within 4Å: Chain E: R.252, Y.270, N.272, S.274, D.322, F.344 4 PLIP interactions: 4 interactions with chain E Hydrophobic interactions: E:F.344 Hydrogen bonds: E:Y.270, E:S.274, E:D.322

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lambert, F. et al., TGF-beta1 activating antibodies as novel immunotherapeutics for graft-versus-host disease. To Be Published

Release Date

2025-06-25

Peptides

Transforming growth factor beta-1 proprotein: ABCD
Transforming growth factor beta activator LRRC32: E
mFab LMT-12, Light Chain: FI
mFab LMT-12, Heavy Chain: GH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

I
I

G
G

H
H

Transforming growth factor beta-1 proprotein

Transforming growth factor beta activator LRRC32

mFab LMT-12, Light Chain

mFab LMT-12, Heavy Chain