SMTL ID : 8rij.1

Discovery of the first orally bioavailable ADAMTS7 inhibitor BAY-9835

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.96 Å

Oligo State

monomer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.113, H.117, H.123 Ligands: 01.6 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.113, A:H.117, A:H.123 ZN.2: 4 residues within 4Å: Chain A: H.63, D.65, H.78, H.91 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.63, A:D.65, A:H.78, A:H.91

3 x CA: CALCIUM ION(Non-covalent)

CA.3: 6 residues within 4Å: Chain A: D.70, G.71, G.73, I.75, D.93, E.96 6 PLIP interactions: 6 interactions with chain A Metal complexes: A:D.70, A:G.71, A:G.73, A:I.75, A:D.93, A:E.96 CA.4: 5 residues within 4Å: Chain A: D.53, G.85, I.86, G.87, D.89 6 PLIP interactions: 4 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.53, A:G.85, A:G.87, A:D.89, H2O.1, H2O.3 CA.5: 3 residues within 4Å: Chain A: D.19, E.94, E.96 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.19, A:E.94, A:E.94, H2O.4, H2O.4

1 x 01: ~{N}-[[(4~{R})-4-cyclopropyl-2,5-bis(oxidanylidene)imidazolidin-4-yl]methyl]-2-(3-fluorophenyl)-1,2,3-triazole-4-carboxamide

01.6: 15 residues within 4Å: Chain A: I.75, L.76, A.77, L.109, T.110, H.113, E.114, H.117, H.123, V.130, F.132, P.133, T.134, Y.135 Ligands: ZN.1 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:I.75, A:H.113, A:Y.135 Hydrogen bonds: A:A.77, A:A.77, A:P.133 Water bridges: A:A.79 pi-Stacking: A:H.113

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.7: 5 residues within 4Å: Chain A: Y.27, K.31, T.100, F.108, I.140 2 PLIP interactions: 2 interactions with chain A Water bridges: A:A.28, A:N.106

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.8: 4 residues within 4Å: Chain A: T.99, H.101, S.102, G.103 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Meibom, D. et al., BAY-9835: Discovery of the First Orally Bioavailable ADAMTS7 Inhibitor. J.Med.Chem. (2024)

Release Date

2024-02-21

Peptides

Macrophage metalloelastase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Macrophage metalloelastase

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