SMTL ID : 8rjj.1

HCV E1/E2 homodimer complex

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-mer

Ligands

10 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG.1: 2 residues within 4Å: Chain B: N.65, T.67 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 3 residues within 4Å: Chain B: E.1, Y.3, N.318 No protein-ligand interaction detected (PLIP) NAG-NAG.3: 5 residues within 4Å: Chain A: R.3, T.5, N.113 Chain B: I.277, E.278 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:T.5 Hydrogen bonds: B:E.278, B:E.278 NAG-NAG.4: 3 residues within 4Å: Chain A: N.4, Y.9 Chain B: W.86 No protein-ligand interaction detected (PLIP) NAG-NAG.5: 4 residues within 4Å: Chain B: Q.29, N.40, T.42, A.43 No protein-ligand interaction detected (PLIP) NAG-NAG.6: 2 residues within 4Å: Chain D: N.65, T.67 No protein-ligand interaction detected (PLIP) NAG-NAG.7: 3 residues within 4Å: Chain D: E.1, Y.3, N.318 No protein-ligand interaction detected (PLIP) NAG-NAG.8: 6 residues within 4Å: Chain C: R.3, T.5, N.113 Chain D: N.276, I.277, E.278 3 PLIP interactions: 2 interactions with chain D, 1 interactions with chain C Hydrogen bonds: D:E.278, D:E.278 Hydrophobic interactions: C:T.5 NAG-NAG.9: 3 residues within 4Å: Chain C: N.4, Y.9 Chain D: W.86 No protein-ligand interaction detected (PLIP) NAG-NAG.10: 5 residues within 4Å: Chain D: K.27, Q.29, N.40, T.42, A.43 No protein-ligand interaction detected (PLIP)

8 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.11: 6 residues within 4Å: Chain B: S.36, N.174, S.175, T.176, F.178, K.180 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA.12: 3 residues within 4Å: Chain B: S.66, C.69, N.246 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA.13: 5 residues within 4Å: Chain B: L.73, S.74, C.243, F.247, N.268 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:L.73 NAG-NAG-BMA.14: 4 residues within 4Å: Chain A: N.17, R.105, Q.107, T.108 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.105, A:Q.107, A:Q.107 NAG-NAG-BMA.15: 6 residues within 4Å: Chain D: S.36, N.174, S.175, T.176, F.178, K.180 1 PLIP interactions: 1 interactions with chain D Hydrophobic interactions: D:F.178 NAG-NAG-BMA.16: 4 residues within 4Å: Chain D: S.66, C.69, C.243, N.246 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA.17: 5 residues within 4Å: Chain D: L.73, S.74, C.243, F.247, N.268 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:L.73 NAG-NAG-BMA.18: 4 residues within 4Å: Chain C: N.17, R.105, Q.107, T.108 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:R.105, C:Q.107, C:Q.107

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose

NAG.19: 2 residues within 4Å: Chain B: N.93, T.95 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.93 NAG.20: 1 residues within 4Å: Chain D: N.93 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:N.93

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Augestad, E.H. et al., The hepatitis C virus envelope protein complex is a dimer of heterodimers. Nature (2024)

Release Date

2024-09-04

Peptides

Genome polyprotein: AC
HCV S52 E2: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

C
A

B
D

D
B

Genome polyprotein

HCV S52 E2