SMTL ID : 8rjw.1

Human RAD52 open ring - ssDNA complex

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-9-mer

Ligands

5 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 5 residues within 4Å: Chain B: E.145, D.149 Chain C: E.140, K.144 Chain J: T.20 3 PLIP interactions: 1 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:E.140, H2O.1, H2O.1 MG.2: 4 residues within 4Å: Chain C: Y.126, E.145 Chain D: E.140, K.144 No protein-ligand interaction detected (PLIP) MG.3: 5 residues within 4Å: Chain D: Y.126, E.145, D.149 Chain E: E.140, K.144 4 PLIP interactions: 2 interactions with chain D, 1 interactions with chain E, 1 Ligand-Water interactions Metal complexes: D:Y.126, D:D.149, E:E.140, H2O.1 MG.4: 3 residues within 4Å: Chain F: E.140, K.144 Chain J: T.9 5 PLIP interactions: 1 interactions with chain F, 4 Ligand-Water interactions Metal complexes: F:E.140, H2O.1, H2O.1, H2O.1, H2O.2 MG.5: 1 residues within 4Å: Chain G: E.140 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liang, C.C. et al., Mechanism of single-stranded DNA annealing by RAD52-RPA complex. Nature (2024)

Release Date

2024-04-24

Peptides

DNA repair protein RAD52 homolog: ABCDEFGHI

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

DNA repair protein RAD52 homolog

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