SMTL ID : 8rke.1 (2 other biounits)

Crystal structure of the complete N-terminal region of human ZP2 (hZP2-N1N2N3)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

monomer

Ligands

1 x NAG- NAG- BMA- MAN- MAN- MAN: alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-MAN-MAN.1: 6 residues within 4Å: Chain A: N.231, T.233, H.234, H.262, D.267, H.277 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:D.267, A:H.277 Hydrogen bonds: A:H.234

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 3 residues within 4Å: Chain A: P.48, N.49 Ligands: NAG.3 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:P.48 NAG.3: 5 residues within 4Å: Chain A: N.49, T.64, D.66, N.67 Ligands: NAG.2 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.49, A:N.67 NAG.4: 1 residues within 4Å: Chain A: N.185 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nishio, S. et al., ZP2 cleavage blocks polyspermy by modulating the architecture of the egg coat. Cell (2024)

Release Date

2024-03-13

Peptides

Zona pellucida sperm-binding protein 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Zona pellucida sperm-binding protein 2

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