SMTL ID : 8rln.1

Crystal structure of human adenosine A2A receptor (construct A2A-PSB2-bRIL) complexed with the partial antagonist LUF5834 at the orthosteric pocket

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.43 Å

Oligo State

monomer

Ligands

3 x CLR: CHOLESTEROL(Non-covalent)

CLR.1: 11 residues within 4Å: Chain A: L.67, F.71, F.79, A.81, A.82, G.85, C.86, F.88, I.89, Q.172 Ligands: OLC.7 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:F.71, A:A.82, A:F.88, A:I.89 Hydrogen bonds: A:A.82 CLR.2: 12 residues within 4Å: Chain A: L.349, L.352, P.353, I.356, I.357, F.360, C.367, S.368, H.369, A.370, P.371, L.374 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:L.352, A:P.353, A:I.357, A:A.370, A:L.374 Hydrogen bonds: A:S.368 CLR.3: 11 residues within 4Å: Chain A: F.191, F.192, L.196, L.352, I.356, C.359, F.360, F.363, C.364, C.367 Ligands: OLC.9 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:L.352, A:F.360, A:F.360, A:F.360, A:F.363

4 x OLA: OLEIC ACID(Non-covalent)(Non-functional Binders)

OLA.4: 8 residues within 4Å: Chain A: L.23, P.70, I.73, T.74, T.77, F.79 Ligands: OLA.5, OLC.7 No protein-ligand interaction detected (PLIP) OLA.5: 2 residues within 4Å: Ligands: OLA.4, OLC.7 No protein-ligand interaction detected (PLIP) OLA.6: 10 residues within 4Å: Chain A: F.53, F.102, L.105, A.106, I.109, D.110, I.113, V.125, I.133, C.137 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:I.109, A:I.133, A:I.133 Hydrogen bonds: A:D.110 OLA.12: 11 residues within 4Å: Chain A: G.14, V.17, Y.18, V.21, L.372, W.373, Y.376, L.377, V.380, L.381, T.384 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:V.17, A:V.21, A:Y.376, A:V.380, A:T.384 Water bridges: A:P.11, A:G.14

3 x OLC: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate(Non-covalent)

OLC.7: 11 residues within 4Å: Chain A: V.66, L.67, P.70, F.71, T.74, F.79, C.80, Q.172 Ligands: CLR.1, OLA.4, OLA.5 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:F.71, A:F.79, A:F.79 Hydrogen bonds: A:C.80 OLC.9: 5 residues within 4Å: Chain A: F.192, L.196, F.363, P.365 Ligands: CLR.3 No protein-ligand interaction detected (PLIP) OLC.13: 12 residues within 4Å: Chain A: Y.52, V.55, S.56, A.59, A.63, F.92, L.96, K.131, I.134, W.138, F.142 Ligands: OLB.8 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:A.59, A:F.92, A:W.138, A:W.138

1 x OLB: (2S)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate(Non-covalent)

OLB.8: 13 residues within 4Å: Chain A: C.37, V.40, W.41, Q.47, Y.52, V.55, A.59, I.62, A.63, V.66, L.67, K.131 Ligands: OLC.13 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:A.59, A:I.62, A:A.63 Hydrogen bonds: A:Y.52

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.10: 5 residues within 4Å: Chain A: T.128, R.129, G.132, I.133, I.136 No protein-ligand interaction detected (PLIP)

1 x 01: 2-azanyl-4-(4-hydroxyphenyl)-6-(1~{H}-imidazol-2-ylmethylsulfanyl)pyridine-3,5-dicarbonitrile

01.11: 18 residues within 4Å: Chain A: Y.18, A.72, I.75, S.76, V.93, L.94, T.97, F.177, E.178, M.186, W.351, L.354, N.358, L.372, M.375, Y.376, I.379, S.382 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:V.93, A:L.94, A:F.177, A:W.351, A:L.354 Hydrogen bonds: A:N.358 pi-Stacking: A:F.177

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Claff, T. et al., Structural Insights into Partial Activation of the Prototypic G Protein-Coupled Adenosine A 2A Receptor. Acs Pharmacol Transl Sci (2024)

Release Date

2024-06-19

Peptides

Adenosine receptor A2a,Soluble cytochrome b562: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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Adenosine receptor A2a,Soluble cytochrome b562

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