SMTL ID : 8rmu.1

Galectin-3 with a bound inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.20 Å

Oligo State

monomer

Ligands

1 x 01: (2~{R},3~{R},4~{S},5~{R},6~{R})-~{N}-[3,5-bis(chloranyl)phenyl]-6-(hydroxymethyl)-3-methoxy-5-oxidanyl-~{N}-[(1~{S},2~{S})-2-oxidanylcyclopentyl]-4-[4-[3,4,5-tris(fluoranyl)phenyl]-1,2,3-triazol-1-yl]oxane-2-carboxamide

01.1: 17 residues within 4Å: Chain A: R.33, I.34, A.35, H.47, N.49, R.51, E.54, V.61, N.63, W.70, G.71, E.73, R.75, S.126, G.127 Ligands: SCN.2, SCN.3 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:A.35, A:W.70 Hydrogen bonds: A:H.47, A:R.51, A:R.51, A:N.63, A:E.73, A:E.73, A:R.75 Water bridges: A:H.47, A:W.70 pi-Stacking: A:H.47, A:W.70 pi-Cation interactions: A:R.33

2 x SCN: THIOCYANATE ION(Non-functional Binders)

SCN.2: 4 residues within 4Å: Chain A: R.33, N.49, R.51 Ligands: 01.1 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.33 SCN.3: 6 residues within 4Å: Chain A: V.5, P.6, R.33, S.126, G.127 Ligands: 01.1 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.33, A:R.33

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zumbrunn, C. et al., Discovery of galactopyranose-1-carboxamides as a new class of small, novel, potent, selective, and orally efficacious galectin-3 inhibitors. To Be Published

Release Date

2025-01-29

Peptides

Galectin-3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Galectin-3

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