SMTL ID : 8rp4.1

Alpha-Methylacyl-CoA racemase from Mycobacterium tuberculosis (D156A mutant)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.64 Å

Oligo State

homo-dimer

Ligands

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 5 residues within 4Å: Chain A: A.215, R.266, A.267, W.269, P.270 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.266, A:R.266 EDO.2: 5 residues within 4Å: Chain A: M.330, P.331, R.334, A.339, S.340 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:P.331 Water bridges: A:R.334, A:S.340 EDO.5: 9 residues within 4Å: Chain B: H.309, N.310, I.314, I.315, N.318, T.319, F.320, Y.321, W.327 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:H.309, B:T.319, B:F.320 EDO.6: 5 residues within 4Å: Chain B: A.215, R.266, A.267, W.269, P.270 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:A.215, B:R.266, B:R.266, B:R.266

3 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.3: 13 residues within 4Å: Chain A: I.17, G.18, P.19, H.127, D.128, Y.131, N.153, A.157, M.189 Chain B: M.199, L.218, Y.225, I.241 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.127, A:D.128, A:N.153 PEG.4: 5 residues within 4Å: Chain A: R.204, W.209, T.210, D.211, T.212 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.211 PEG.7: 14 residues within 4Å: Chain A: M.199, M.217, L.218, Y.225, I.241 Chain B: I.17, G.18, P.19, H.127, D.128, Y.131, N.153, A.157, M.189 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:H.127, B:D.128, B:N.153

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mojanaga, O.O. et al., alpha-Methylacyl-CoA Racemase from Mycobacterium tuberculosis -Detailed Kinetic and Structural Characterization of the Active Site. Biomolecules (2024)

Release Date

2024-04-10

Peptides

Alpha-methylacyl-CoA racemase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Alpha-methylacyl-CoA racemase