SMTL ID : 8rq9.1 (1 other biounit)

Crystal structure of PROTAC CFT-1297 in complex with CRBN-midi and BRD4(BD2)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.91 Å

Oligo State

hetero-1-1-mer

Ligands

1 x 01: (3~{S})-3-[7-[1-[7-[4-[6-(4-chlorophenyl)-1-methyl-spiro[[1,2,4]triazolo[4,3-a][1,4]benzodiazepine-4,1'-cyclopropane]-8-yl]pyrazol-1-yl]heptyl]piperidin-4-yl]-3-oxidanylidene-1~{H}-isoindol-2-yl]piperidine-2,6-dione

01.1: 19 residues within 4Å: Chain A: N.254, P.255, H.256, E.280, H.281, S.282, W.283, W.289, W.303, F.305 Chain B: A.40, W.44, P.45, F.46, V.50, Y.102, N.103, V.109, M.112 18 PLIP interactions: 10 interactions with chain B, 8 interactions with chain A Hydrophobic interactions: B:A.40, B:W.44, B:W.44, B:W.44, B:P.45, B:F.46, B:V.50, B:Y.102, B:V.109, A:W.283, A:W.289, A:W.289, A:W.289, A:W.303 pi-Stacking: B:W.44 Hydrogen bonds: A:N.254, A:H.281, A:W.283

1 x ZN: ZINC ION

ZN.2: 4 residues within 4Å: Chain A: C.226, C.229, C.294, C.297 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.226, A:C.229, A:C.294, A:C.297

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kroupova, A. et al., Design of a Cereblon construct for crystallographic and biophysical studies of protein degraders. To Be Published

Release Date

2024-09-25

Peptides

Protein cereblon: A
Bromodomain-containing protein 4: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Protein cereblon

Bromodomain-containing protein 4

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