SMTL ID : 8rrv.1

Structure of RyR1 in detergent in close state in complex with FKBP and Nb9657.

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-4-4-4-mer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.4958, C.4961, H.4978, H.4983 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.4958, A:C.4961, A:H.4978, A:H.4983 ZN.2: 4 residues within 4Å: Chain B: C.4958, C.4961, H.4978, H.4983 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.4958, B:C.4961, B:H.4978, B:H.4983 ZN.3: 4 residues within 4Å: Chain C: C.4958, C.4961, H.4978, H.4983 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.4958, C:C.4961, C:H.4978, C:H.4983 ZN.4: 4 residues within 4Å: Chain D: C.4958, C.4961, H.4978, H.4983 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:C.4958, D:C.4961, D:H.4978, D:H.4983

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, C. et al., Rapid small-scale nanobody-assisted purification of ryanodine receptors for cryo-EM. J.Biol.Chem. (2024)

Release Date

2024-10-09

Peptides

Ryanodine receptor 1: ABCD
Peptidyl-prolyl cis-trans isomerase FKBP1B: EFGH
nanobody9657: IJKL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
E

C
G

D
J

E
A

F
D

G
H

H
I

I
C

J
F

K
K

L
M

Membrane

We predict this structure to be a membrane protein.
Show / Hide

Ryanodine receptor 1

Peptidyl-prolyl cis-trans isomerase FKBP1B

nanobody9657

Related Entries With Identical Sequence