SMTL ID : 8rrz.1

Crystal structure of SYK kinase in complex with compound 1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

monomer

Ligands

1 x 01: N-[(2S)-1-(azetidin-1-yl)propan-2-yl]-3-{2-[(3,5-dimethoxyphenyl)amino]pyrimidin-4-yl}-1-methyl-1H-pyrazole-5-carboxamide

01.1: 23 residues within 4Å: Chain A: L.24, G.25, S.26, F.29, V.32, A.47, K.49, E.67, V.80, L.93, M.95, E.96, M.97, A.98, E.99, L.100, G.101, P.102, N.146, L.148, S.158, D.159, F.160 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:L.24, A:A.47, A:L.148 Hydrogen bonds: A:K.49, A:A.98, A:A.98 Water bridges: A:D.159, A:D.159 Salt bridges: A:D.159

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 2 residues within 4Å: Chain A: K.234, E.236 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.234 Water bridges: A:E.236 GOL.3: 7 residues within 4Å: Chain A: N.171, Y.172, S.197, S.198, K.199, V.260, E.261 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.261 Water bridges: A:S.197, A:S.197

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cervi, G. et al., Discovery and optimization of 4-pyrazolyl-2-aminopyrimidine derivatives as potent spleen tyrosine kinase (SYK) inhibitors. Eur.J.Med.Chem. (2024)

Release Date

2024-04-24

Peptides

Tyrosine-protein kinase SYK: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Tyrosine-protein kinase SYK

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