SMTL ID : 8rte.1

Rap from bacteriophage Phi105 with peptide ERPVGT

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-dimer

Ligands

2 x GLU- ARG- PRO- VAL- GLY- THR: Peptide ERPVGT(Non-covalent)

GLU-ARG-PRO-VAL-GLY-THR.1: 23 residues within 4Å: Chain A: Q.65, K.139, S.142, M.145, M.146, R.148, T.176, M.179, I.180, Q.183, D.187, L.216, N.220, I.223, W.247, Y.252, N.255, Y.258, M.259, Y.292, K.295, D.328, D.332 25 PLIP interactions: 25 interactions with chain A Hydrophobic interactions: A:I.180, A:Q.183, A:N.220, A:I.223, A:W.247, A:Y.252, A:Y.252, A:Y.252 Hydrogen bonds: A:Q.65, A:S.142, A:S.142, A:M.145, A:Q.183, A:N.220, A:N.220, A:D.332 Water bridges: A:N.255, A:Y.258, A:K.295, A:D.328, A:D.332 Salt bridges: A:K.139, A:D.187, A:K.295, A:D.328 GLU-ARG-PRO-VAL-GLY-THR.2: 22 residues within 4Å: Chain B: Q.65, K.139, S.142, M.145, M.146, R.148, T.176, M.179, I.180, Q.183, D.187, L.216, N.220, I.223, Y.252, N.255, Y.258, M.259, Y.292, K.295, D.328, D.332 26 PLIP interactions: 26 interactions with chain B Hydrophobic interactions: B:I.180, B:Q.183, B:L.216, B:I.223, B:Y.252, B:Y.252 Hydrogen bonds: B:Q.65, B:S.142, B:M.145, B:Q.183, B:N.220, B:N.220, B:Y.292, B:D.328 Water bridges: B:D.187, B:D.187, B:H.219, B:Y.252, B:N.255, B:K.262, B:K.295, B:D.328 Salt bridges: B:K.139, B:D.187, B:K.295, B:D.328

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Felipe-Ruiz, A. et al., Extracellular proteolysis of tandemly duplicated pheromone propeptides affords additional complexity to bacterial quorum sensing. Plos Biol. (2024)

Release Date

2024-07-24

Peptides

Rap105: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Rap105