SMTL ID : 8rth.1

Trypanosoma brucei 3-methylcrotonyl-CoA carboxylase

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-6-6-mer

Ligands

6 x BTI: 5-(HEXAHYDRO-2-OXO-1H-THIENO[3,4-D]IMIDAZOL-6-YL)PENTANAL(Covalent)

BTI.1: 11 residues within 4Å: Chain A: M.640, K.641 Chain F: I.432, T.462, G.463, F.464, N.533, Q.534, T.537 Chain H: L.299, A.303 6 PLIP interactions: 4 interactions with chain F, 2 interactions with chain H Hydrophobic interactions: F:Q.534, H:L.299, H:A.303 Hydrogen bonds: F:F.464, F:Q.534, F:Q.534 BTI.2: 11 residues within 4Å: Chain B: I.432, T.462, G.463, F.464, N.533, Q.534, T.537 Chain C: M.640, K.641 Chain L: L.299, A.303 6 PLIP interactions: 4 interactions with chain B, 2 interactions with chain L Hydrophobic interactions: B:Q.534, L:L.299, L:A.303 Hydrogen bonds: B:F.464, B:Q.534, B:Q.534 BTI.3: 11 residues within 4Å: Chain D: I.432, T.462, G.463, F.464, N.533, Q.534, T.537 Chain E: M.640, K.641 Chain J: L.299, A.303 5 PLIP interactions: 4 interactions with chain D, 1 interactions with chain J Hydrophobic interactions: D:Q.534, J:A.303 Hydrogen bonds: D:F.464, D:Q.534, D:Q.534 BTI.4: 11 residues within 4Å: Chain B: L.299, A.303 Chain G: M.640, K.641 Chain L: I.432, T.462, G.463, F.464, N.533, Q.534, T.537 6 PLIP interactions: 4 interactions with chain L, 2 interactions with chain B Hydrophobic interactions: L:Q.534, B:L.299, B:A.303 Hydrogen bonds: L:F.464, L:Q.534, L:Q.534 BTI.5: 11 residues within 4Å: Chain F: L.299, A.303 Chain H: I.432, T.462, G.463, F.464, N.533, Q.534, T.537 Chain I: M.640, K.641 6 PLIP interactions: 2 interactions with chain F, 4 interactions with chain H Hydrophobic interactions: F:L.299, F:A.303, H:Q.534 Hydrogen bonds: H:F.464, H:Q.534, H:Q.534 BTI.6: 11 residues within 4Å: Chain D: L.299, A.303 Chain J: I.432, T.462, G.463, F.464, N.533, Q.534, T.537 Chain K: M.640, K.641 5 PLIP interactions: 1 interactions with chain D, 4 interactions with chain J Hydrophobic interactions: D:A.303, J:Q.534 Hydrogen bonds: J:F.464, J:Q.534, J:Q.534

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Plaza-Pegueroles, A. et al., The cryo-EM structure of trypanosome 3-methylcrotonyl-CoA carboxylase provides mechanistic and dynamic insights into its enzymatic function. Structure (2024)

Release Date

2024-04-17

Peptides

3-methylcrotonyl-CoA carboxylase, putative: ACEGIK
methylcrotonoyl-CoA carboxylase: BDFHJL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

E
E

G
G

I
I

K
K

B
B

D
D

F
F

H
H

J
J

L
L

3-methylcrotonyl-CoA carboxylase, putative

methylcrotonoyl-CoA carboxylase