SMTL ID : 8rwb.1

Crystal structure of ULBP6 in complex with a blocking antibody

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.31 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 4 residues within 4Å: Chain A: H.35, D.37, N.40, T.44 No protein-ligand interaction detected (PLIP)

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 2 residues within 4Å: Chain A: K.51, N.54 No protein-ligand interaction detected (PLIP)

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 3 residues within 4Å: Chain B: G.43 Chain C: G.99 Ligands: GOL.4 4 PLIP interactions: 1 interactions with chain C, 3 interactions with chain B Hydrogen bonds: C:G.99, B:G.43 Water bridges: B:K.42, B:K.42 EDO.5: 2 residues within 4Å: Chain C: A.54, S.55 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:S.55 Water bridges: C:S.55 EDO.6: 6 residues within 4Å: Chain B: Q.38 Chain C: Q.37, K.38, P.39, G.40, T.84 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:G.40, C:T.84

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 7 residues within 4Å: Chain B: G.43 Chain C: S.9, T.84, Y.86, G.99, G.100 Ligands: EDO.3 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:S.9, C:T.84, C:G.99

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bharill, S. et al., Crystal structure of ULBP6 in complex with a blocking antibody. To Be Published

Release Date

2025-02-12

Peptides

UL16-binding protein 6: A
Heavy chain: B
Light chain: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
P

B
H

C
L

UL16-binding protein 6

Heavy chain

Light chain