SMTL ID : 8rwj.1

cryoEM structure of Acs1 filament determined by FilamentID

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-9-mer

Ligands

9 x 6R9: [[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] ethanoate(Non-covalent)

6R9.1: 13 residues within 4Å: Chain A: W.365, G.443, P.445, D.467, T.468, Y.469, W.470, Q.471, T.472, D.559, I.571, R.574, K.675 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:G.443, A:T.468, A:W.470, A:T.472, A:T.472, A:D.559, A:R.574, A:K.675 Salt bridges: A:K.675, A:K.675 pi-Stacking: A:Y.469, A:Y.469 6R9.2: 13 residues within 4Å: Chain B: W.365, G.443, P.445, D.467, T.468, Y.469, W.470, Q.471, T.472, D.559, I.571, R.574, K.675 12 PLIP interactions: 12 interactions with chain B Hydrogen bonds: B:G.443, B:T.468, B:W.470, B:T.472, B:T.472, B:D.559, B:R.574, B:K.675 Salt bridges: B:K.675, B:K.675 pi-Stacking: B:Y.469, B:Y.469 6R9.3: 13 residues within 4Å: Chain C: W.365, G.443, P.445, D.467, T.468, Y.469, W.470, Q.471, T.472, D.559, I.571, R.574, K.675 12 PLIP interactions: 12 interactions with chain C Hydrogen bonds: C:G.443, C:T.468, C:W.470, C:T.472, C:T.472, C:D.559, C:R.574, C:K.675 Salt bridges: C:K.675, C:K.675 pi-Stacking: C:Y.469, C:Y.469 6R9.4: 13 residues within 4Å: Chain D: W.365, G.443, P.445, D.467, T.468, Y.469, W.470, Q.471, T.472, D.559, I.571, R.574, K.675 12 PLIP interactions: 12 interactions with chain D Hydrogen bonds: D:G.443, D:T.468, D:W.470, D:T.472, D:T.472, D:D.559, D:R.574, D:K.675 Salt bridges: D:K.675, D:K.675 pi-Stacking: D:Y.469, D:Y.469 6R9.5: 13 residues within 4Å: Chain E: W.365, G.443, P.445, D.467, T.468, Y.469, W.470, Q.471, T.472, D.559, I.571, R.574, K.675 12 PLIP interactions: 12 interactions with chain E Hydrogen bonds: E:G.443, E:T.468, E:W.470, E:T.472, E:T.472, E:D.559, E:R.574, E:K.675 Salt bridges: E:K.675, E:K.675 pi-Stacking: E:Y.469, E:Y.469 6R9.6: 13 residues within 4Å: Chain F: W.365, G.443, P.445, D.467, T.468, Y.469, W.470, Q.471, T.472, D.559, I.571, R.574, K.675 12 PLIP interactions: 12 interactions with chain F Hydrogen bonds: F:G.443, F:T.468, F:W.470, F:T.472, F:T.472, F:D.559, F:R.574, F:K.675 Salt bridges: F:K.675, F:K.675 pi-Stacking: F:Y.469, F:Y.469 6R9.7: 13 residues within 4Å: Chain G: W.365, G.443, P.445, D.467, T.468, Y.469, W.470, Q.471, T.472, D.559, I.571, R.574, K.675 12 PLIP interactions: 12 interactions with chain G Hydrogen bonds: G:G.443, G:T.468, G:W.470, G:T.472, G:T.472, G:D.559, G:R.574, G:K.675 Salt bridges: G:K.675, G:K.675 pi-Stacking: G:Y.469, G:Y.469 6R9.8: 13 residues within 4Å: Chain H: W.365, G.443, P.445, D.467, T.468, Y.469, W.470, Q.471, T.472, D.559, I.571, R.574, K.675 12 PLIP interactions: 12 interactions with chain H Hydrogen bonds: H:G.443, H:T.468, H:W.470, H:T.472, H:T.472, H:D.559, H:R.574, H:K.675 Salt bridges: H:K.675, H:K.675 pi-Stacking: H:Y.469, H:Y.469 6R9.9: 13 residues within 4Å: Chain I: W.365, G.443, P.445, D.467, T.468, Y.469, W.470, Q.471, T.472, D.559, I.571, R.574, K.675 12 PLIP interactions: 12 interactions with chain I Hydrogen bonds: I:G.443, I:T.468, I:W.470, I:T.472, I:T.472, I:D.559, I:R.574, I:K.675 Salt bridges: I:K.675, I:K.675 pi-Stacking: I:Y.469, I:Y.469

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hugener, J. et al., FilamentID reveals the composition and function of metabolic enzyme polymers during gametogenesis. Cell (2024)

Release Date

2024-06-26

Peptides

Acetyl-coenzyme A synthetase: ABCDEFGHI

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
I

C
A

D
B

E
C

F
E

G
F

H
G

I
H

Acetyl-coenzyme A synthetase