SMTL ID : 8rwk.1

cryoEM structure of the central Ald4 filament determined by FilamentID

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-tetramer

Ligands

4 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.1: 20 residues within 4Å: Chain A: I.188, P.190, W.191, N.192, K.215, E.218, F.247, G.248, G.252, F.266, G.268, S.269, T.272, G.292, C.324, M.370, Q.371, K.374, E.421, F.423 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:P.190 Hydrogen bonds: A:W.191, A:N.192, A:G.248, A:K.249, A:S.269, A:T.272, A:T.272, A:Q.371, A:K.374 Salt bridges: A:K.215 NAP.2: 20 residues within 4Å: Chain B: I.188, P.190, W.191, N.192, K.215, E.218, F.247, G.248, G.252, F.266, G.268, S.269, T.272, G.292, C.324, M.370, Q.371, K.374, E.421, F.423 11 PLIP interactions: 11 interactions with chain B Hydrophobic interactions: B:P.190 Hydrogen bonds: B:W.191, B:N.192, B:G.248, B:K.249, B:S.269, B:T.272, B:T.272, B:Q.371, B:K.374 Salt bridges: B:K.215 NAP.3: 20 residues within 4Å: Chain C: I.188, P.190, W.191, N.192, K.215, E.218, F.247, G.248, G.252, F.266, G.268, S.269, T.272, G.292, C.324, M.370, Q.371, K.374, E.421, F.423 10 PLIP interactions: 10 interactions with chain C Hydrophobic interactions: C:P.190 Hydrogen bonds: C:W.191, C:N.192, C:G.248, C:K.249, C:S.269, C:T.272, C:Q.371, C:K.374 Salt bridges: C:K.215 NAP.4: 20 residues within 4Å: Chain D: I.188, P.190, W.191, N.192, K.215, E.218, F.247, G.248, G.252, F.266, G.268, S.269, T.272, G.292, C.324, M.370, Q.371, K.374, E.421, F.423 10 PLIP interactions: 10 interactions with chain D Hydrophobic interactions: D:P.190 Hydrogen bonds: D:W.191, D:N.192, D:G.248, D:K.249, D:S.269, D:T.272, D:Q.371, D:K.374 Salt bridges: D:K.215

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hugener, J. et al., FilamentID reveals the composition and function of metabolic enzyme polymers during gametogenesis. Cell (2024)

Release Date

2024-06-26

Peptides

Potassium-activated aldehyde dehydrogenase, mitochondrial: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Potassium-activated aldehyde dehydrogenase, mitochondrial