SMTL ID : 8rxm.1

Galectin-3 in complex with thiogalactoside derivative

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.10 Å

Oligo State

monomer

Ligands

1 x YNO: 5-bromanyl-3-[(2~{R},3~{R},4~{S},5~{R},6~{R})-4-[4-(4-chloranyl-1,3-thiazol-2-yl)-1,2,3-triazol-1-yl]-6-(hydroxymethyl)-3-methoxy-5-oxidanyl-oxan-2-yl]sulfanyl-pyridine-2-carbonitrile(Non-covalent)

YNO.1: 12 residues within 4Å: Chain A: R.32, I.33, A.34, H.46, N.48, R.50, N.62, W.69, G.70, E.72, S.125, G.126 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:W.69 Hydrogen bonds: A:N.48, A:N.48, A:R.50, A:N.62 Water bridges: A:R.32, A:R.50 pi-Cation interactions: A:R.32

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 3 residues within 4Å: Chain A: T.25, G.83, P.85 No protein-ligand interaction detected (PLIP)

1 x MG: MAGNESIUM ION(Non-functional Binders)

MG.3: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

5 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 2 residues within 4Å: Chain A: S.134, Y.135 Ligand excluded by PLIP CL.5: 3 residues within 4Å: Chain A: L.2, I.3, Y.6 Ligand excluded by PLIP CL.6: 6 residues within 4Å: Chain A: Q.38, R.39, G.40, E.118, S.120, K.121 Ligand excluded by PLIP CL.7: 3 residues within 4Å: Chain A: V.113, K.114, K.115 Ligand excluded by PLIP CL.8: 3 residues within 4Å: Chain A: K.115, L.116, N.117 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nilsson, U. et al., Galectin-3 in complex with thiogalactoside derivative. To be published

Release Date

2025-10-15

Peptides

Galectin-3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
AAA

Galectin-3

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