SMTL ID : 8rz3.3 (2 other biounits)

Structures of Se- glycosyltransferase SenB from Variovorax paradoxus

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

monomer

Ligands

1 x UD1: URIDINE-DIPHOSPHATE-N-ACETYLGLUCOSAMINE(Non-covalent)

UD1.1: 29 residues within 4Å: Chain A: N.17, N.18, G.19, N.20, R.22, T.23, T.83, G.84, T.85, L.110, Q.131, V.151, H.153, R.155, K.158, I.181, G.182, A.208, L.209, H.211, T.214, L.230, E.231, G.232, G.233, A.234, H.235, V.236, E.239 25 PLIP interactions: 25 interactions with chain A Hydrophobic interactions: A:T.85 Hydrogen bonds: A:N.17, A:G.19, A:R.22, A:Q.131, A:R.155, A:K.158, A:K.158, A:L.209, A:L.209, A:E.231, A:E.231, A:G.232, A:G.233, A:G.233, A:H.235, A:H.235, A:V.236, A:E.239 Water bridges: A:N.20, A:N.20 Salt bridges: A:R.155, A:K.158, A:K.158, A:H.235

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xu, S. et al., Structures of SenB and SenA enzymes from Variovorax paradoxus provide insights into carbon-selenium bond formation in selenoneine biosynthesis. Heliyon (2024)

Release Date

2024-09-11

Peptides

TIGR04348 family glycosyltransferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

TIGR04348 family glycosyltransferase

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