SMTL ID : 8rzu.1

Structure of human SETD2 L1609P mutant in complex with SAM and H3K36M peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.19 Å

Oligo State

hetero-1-1-mer

Ligands

3 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: C.83, C.85, C.100, C.104 Ligands: ZN.2 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.83, A:C.85, A:C.100, A:C.104 ZN.2: 5 residues within 4Å: Chain A: C.100, C.113, C.117, C.123 Ligands: ZN.1 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.100, A:C.113, A:C.117, A:C.123 ZN.3: 5 residues within 4Å: Chain A: C.215, C.262, C.264, C.269, R.270 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.215, A:C.262, A:C.264, A:C.269

1 x SAM: S-ADENOSYLMETHIONINE(Non-covalent)

SAM.4: 18 residues within 4Å: Chain A: K.144, G.145, W.146, I.186, H.187, Y.188, Y.189, R.209, F.210, M.211, N.212, H.213, Y.250, K.261, C.262, F.263, C.264, L.273 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:W.146, A:I.186, A:Y.188, A:Y.188, A:Y.189, A:N.212, A:N.212, A:H.213, A:H.213, A:F.263 Salt bridges: A:H.187

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mechaly, A.E. et al., Structure of human SETD2 L1609P mutant in complex with SAM and H3K36M peptide. To Be Published

Release Date

2025-03-05

Peptides

Histone-lysine N-methyltransferase SETD2: A
Histone H3: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Histone-lysine N-methyltransferase SETD2

Histone H3

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