SMTL ID : 8s0l.1

Crystal structure of the TMPRSS2 zymogen in complex with the nanobody A07

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

hetero-1-1-mer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 3 residues within 4Å: Chain A: N.107, A.110, Y.120 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:Y.120 Hydrogen bonds: A:N.107

1 x CA: CALCIUM ION(Non-covalent)

CA.2: 6 residues within 4Å: Chain A: N.25, D.28, V.30, H.32, D.38, E.39 6 PLIP interactions: 6 interactions with chain A Metal complexes: A:N.25, A:D.28, A:V.30, A:H.32, A:D.38, A:E.39

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fernandez, I. et al., Structural basis of TMPRSS2 zymogen activation and recognition by the HKU1 seasonal coronavirus. Cell (2024)

Release Date

2024-06-26

Peptides

Transmembrane protease serine 2: A
Nanobody A07: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Transmembrane protease serine 2

Nanobody A07

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