SMTL ID : 8s1c.1

Intertwined dimer of the PTK6 SH3 domain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

homo-dimer

Ligands

12 x NA: SODIUM ION(Non-functional Binders)

NA.1: 4 residues within 4Å: Chain A: E.32, E.33, W.35, W.36 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:W.35 NA.2: 2 residues within 4Å: Chain A: R.30 Chain B: E.60 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:E.60, A:R.30 NA.3: 3 residues within 4Å: Chain A: Y.57 Chain B: D.9, F.10 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:D.9 NA.4: 4 residues within 4Å: Chain A: T.39, Q.50 Chain B: H.27 Ligands: CL.11 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.39 Water bridges: A:T.39 NA.5: 3 residues within 4Å: Chain A: D.15, E.17, L.18 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.15 Water bridges: A:S.19 NA.6: 3 residues within 4Å: Chain A: W.8, D.9, A.22 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.9, A:D.9 NA.7: 4 residues within 4Å: Chain A: E.17 Chain B: W.35, Y.52 Ligands: CL.16 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.17 NA.8: 2 residues within 4Å: Chain A: H.55, N.56 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.56 Water bridges: A:H.55, A:N.56, A:N.56 NA.9: 3 residues within 4Å: Chain A: F.10, K.11 Chain B: Y.57 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.11, A:K.11 NA.10: 1 residues within 4Å: Chain A: E.43 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.43 NA.13: 3 residues within 4Å: Chain B: K.31, W.35 Ligands: CL.16 No protein-ligand interaction detected (PLIP) NA.14: 3 residues within 4Å: Chain A: L.7, W.8 Chain B: N.56 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.56

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.11: 5 residues within 4Å: Chain A: T.39, L.41, A.47 Chain B: H.27 Ligands: NA.4 Ligand excluded by PLIP CL.12: 6 residues within 4Å: Chain A: E.33, W.36, H.55 Chain B: E.33, W.36, H.55 Ligand excluded by PLIP CL.15: 1 residues within 4Å: Chain B: W.37 Ligand excluded by PLIP CL.16: 3 residues within 4Å: Chain B: W.35 Ligands: NA.7, NA.13 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Oeguetcue, D. et al., Intertwined dimer of the PTK6 SH3 domain. To Be Published

Release Date

2025-03-05

Peptides

Protein-tyrosine kinase 6: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Protein-tyrosine kinase 6