SMTL ID : 8s1o.1

Crystal structure of human Rac1-GDP-Pi

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.27 Å

Oligo State

monomer

Ligands

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.1: 18 residues within 4Å: Chain A: D.11, G.12, A.13, V.14, G.15, K.16, T.17, C.18, F.28, I.33, K.116, D.118, L.119, S.158, A.159, L.160 Ligands: MG.2, PO4.3 16 PLIP interactions: 16 interactions with chain A Hydrogen bonds: A:A.13, A:V.14, A:G.15, A:K.16, A:T.17, A:T.17, A:C.18, A:K.116, A:K.116, A:A.159, A:L.160 Water bridges: A:K.16 Salt bridges: A:K.16, A:D.118 pi-Stacking: A:F.28, A:F.28

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 4 residues within 4Å: Chain A: T.17, D.57 Ligands: GDP.1, PO4.3 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:T.17, H2O.1, H2O.1, H2O.1

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.3: 10 residues within 4Å: Chain A: G.12, A.13, K.16, F.37, T.58, A.59, G.60, Q.61 Ligands: GDP.1, MG.2 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:A.13, A:G.60, A:Q.61, A:Q.61, A:Q.61 Water bridges: A:K.16, A:T.17, A:T.17 Salt bridges: A:K.16

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

ferrandez, Y. et al., Crystal structure of human Rac1-GDP-Pi. To Be Published

Release Date

2025-09-03

Peptides

Ras-related C3 botulinum toxin substrate 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Ras-related C3 botulinum toxin substrate 1