SMTL ID : 8s5c.1

Cryo-EM structure of Arf1-decorated membrane tubules

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 5 residues within 4Å: Chain A: K.30, T.31, T.48, D.67 Ligands: GSP.2 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:T.31, A:T.48, H2O.1, H2O.1

1 x GSP: 5'-GUANOSINE-DIPHOSPHATE-MONOTHIOPHOSPHATE(Non-covalent)

GSP.2: 21 residues within 4Å: Chain A: D.26, G.27, A.28, G.29, K.30, T.31, T.32, T.45, P.47, T.48, G.69, G.70, Q.71, N.126, K.127, D.129, L.130, C.159, A.160, T.161 Ligands: MG.1 24 PLIP interactions: 24 interactions with chain A Hydrogen bonds: A:G.27, A:A.28, A:G.29, A:K.30, A:T.31, A:T.32, A:T.32, A:T.32, A:T.45, A:T.48, A:T.48, A:T.48, A:G.70, A:N.126, A:K.127, A:K.127, A:A.160 Water bridges: A:T.31, A:T.31, A:T.31, A:I.46 Salt bridges: A:K.30, A:D.129 pi-Cation interactions: A:K.127

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Haupt, C. et al., Cryo-EM structure of Arf1-decorated membrane tubules. To Be Published

Release Date

2025-01-22

Peptides

ADP-ribosylation factor 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

ADP-ribosylation factor 1

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