SMTL ID : 8s6f.1

A Structural Investigation of the Interaction between a GC-376-Based Peptidomimetic PROTAC and Its Precursor with the Viral Main Protease of Coxsackievirus B3

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.93 Å

Oligo State

monomer

Ligands

1 x VQR: methyl (4~{S})-4-[[(2~{S})-4-methyl-2-(phenylmethoxycarbonylamino)pentanoyl]amino]-5-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]pentanoate(Covalent)

VQR.1: 18 residues within 4Å: Chain A: E.24, F.25, H.40, E.71, N.126, L.127, T.142, R.143, A.144, G.145, Q.146, C.147, H.161, V.162, G.163, G.164, N.165, F.170 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:H.40, A:L.127, A:L.127, A:F.170 Hydrogen bonds: A:T.142, A:G.145, A:C.147, A:V.162, A:G.164

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

De Santis, A. et al., A Structural Investigation of the Interaction between a GC-376-Based Peptidomimetic PROTAC and Its Precursor with the Viral Main Protease of Coxsackievirus B3. Biomolecules (2024)

Release Date

2024-12-04

Peptides

Protease 3C: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Protease 3C

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