SMTL ID : 8s6y.1

Co-crystal structure of TEAD1 with OPN-9652

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.03 Å

Oligo State

homo-tetramer

Ligands

4 x 01: 1-[7-[3-fluoranyl-4-(trifluoromethyl)phenoxy]-3,4-dihydro-1~{H}-isoquinolin-2-yl]propan-1-one

01.1: 20 residues within 4Å: Chain A: F.14, A.16, F.32, V.33, A.83, L.85, V.99, T.115, V.117, K.127, M.149, C.150, M.153, F.156, I.157, L.160, L.173, F.176, I.178, F.198 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:F.14, A:F.32, A:V.99, A:T.115, A:V.117, A:K.127, A:I.178, A:F.198 Hydrogen bonds: A:C.150 01.13: 19 residues within 4Å: Chain B: F.14, A.16, F.32, V.33, A.83, L.85, V.99, T.115, V.117, M.149, C.150, M.153, F.156, I.157, L.160, L.173, F.176, I.178, F.198 10 PLIP interactions: 10 interactions with chain B Hydrophobic interactions: B:F.14, B:F.14, B:A.16, B:F.32, B:V.99, B:T.115, B:V.117, B:I.178, B:F.198 Hydrogen bonds: B:C.150 01.24: 18 residues within 4Å: Chain C: F.14, A.16, F.32, A.83, L.85, V.99, T.115, V.117, M.149, C.150, M.153, F.156, I.157, L.160, L.173, F.176, I.178, F.198 9 PLIP interactions: 9 interactions with chain C Hydrophobic interactions: C:F.14, C:F.14, C:F.32, C:V.99, C:T.115, C:V.117, C:I.178, C:F.198 Hydrogen bonds: C:C.150 01.37: 19 residues within 4Å: Chain D: F.14, A.16, F.32, V.33, A.83, L.85, V.99, T.115, V.117, M.149, C.150, M.153, F.156, I.157, L.160, L.173, F.176, I.178, F.198 11 PLIP interactions: 11 interactions with chain D Hydrophobic interactions: D:F.14, D:F.14, D:A.16, D:F.32, D:V.99, D:T.115, D:V.117, D:I.157, D:I.178, D:F.198 Hydrogen bonds: D:C.150

23 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 6 residues within 4Å: Chain A: Q.21, R.22, D.23, P.24 Chain B: F.135, F.140 Ligand excluded by PLIP EDO.5: 7 residues within 4Å: Chain A: F.96, Y.97, P.148, M.149, I.154 Chain B: Y.132 Ligands: EDO.8 Ligand excluded by PLIP EDO.7: 4 residues within 4Å: Chain A: K.80, W.82, H.210, Y.212 Ligand excluded by PLIP EDO.8: 5 residues within 4Å: Chain A: D.92, A.95, Y.97, I.154 Ligands: EDO.5 Ligand excluded by PLIP EDO.9: 4 residues within 4Å: Chain A: R.134, R.143 Chain B: N.145, R.146 Ligand excluded by PLIP EDO.12: 4 residues within 4Å: Chain A: L.163, P.164, K.166, M.169 Ligand excluded by PLIP EDO.14: 5 residues within 4Å: Chain A: Y.132 Chain B: F.96, Y.97, M.149, I.154 Ligand excluded by PLIP EDO.15: 4 residues within 4Å: Chain A: R.134 Chain B: E.19, K.29, R.146 Ligand excluded by PLIP EDO.16: 6 residues within 4Å: Chain A: N.108, A.133 Chain B: E.19, Q.21, G.94, R.146 Ligand excluded by PLIP EDO.21: 7 residues within 4Å: Chain B: T.6, T.7, K.8, L.9, R.10, E.104, R.139 Ligand excluded by PLIP EDO.22: 6 residues within 4Å: Chain B: S.119, F.120, Y.152, F.156, N.175, F.176 Ligand excluded by PLIP EDO.23: 4 residues within 4Å: Chain B: F.156, K.159, L.163, V.172 Ligand excluded by PLIP EDO.25: 6 residues within 4Å: Chain C: F.96, Y.97, P.148, M.149, I.154 Chain D: Y.132 Ligand excluded by PLIP EDO.26: 3 residues within 4Å: Chain C: S.203, E.204, H.205 Ligand excluded by PLIP EDO.27: 4 residues within 4Å: Chain D: F.17, E.19, K.29, R.146 Ligand excluded by PLIP EDO.31: 2 residues within 4Å: Chain C: S.119, K.122 Ligand excluded by PLIP EDO.32: 4 residues within 4Å: Chain C: K.159, V.172 Ligands: EDO.35, EDO.36 Ligand excluded by PLIP EDO.33: 3 residues within 4Å: Chain C: Y.167, N.170 Ligands: EDO.34 Ligand excluded by PLIP EDO.34: 6 residues within 4Å: Chain C: K.166, N.170, V.200, S.201, N.202 Ligands: EDO.33 Ligand excluded by PLIP EDO.35: 5 residues within 4Å: Chain C: S.119, F.120, N.175, F.176 Ligands: EDO.32 Ligand excluded by PLIP EDO.36: 3 residues within 4Å: Chain C: F.156, K.159 Ligands: EDO.32 Ligand excluded by PLIP EDO.38: 5 residues within 4Å: Chain C: Y.132 Chain D: F.96, Y.97, M.149, I.154 Ligand excluded by PLIP EDO.39: 5 residues within 4Å: Chain C: F.135, F.140 Chain D: Q.21, D.23, P.24 Ligand excluded by PLIP

12 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 3 residues within 4Å: Chain A: G.71, P.72, Q.73 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.73 SO4.4: 3 residues within 4Å: Chain A: S.119, V.124, Y.152 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.119, A:S.119, A:Y.152 SO4.6: 4 residues within 4Å: Chain A: K.127, C.150, E.151 Chain B: R.185 6 PLIP interactions: 5 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:E.151, B:R.185 Water bridges: A:K.127, A:K.127, A:Y.152 Salt bridges: A:K.127 SO4.10: 4 residues within 4Å: Chain A: H.34, I.35, G.36, H.209 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:H.34, A:G.36 Salt bridges: A:H.34, A:H.209 SO4.17: 6 residues within 4Å: Chain B: H.34, I.35, G.36, H.38, H.209 Chain C: G.138 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:G.36 Salt bridges: B:H.34, B:H.38, B:H.209 SO4.18: 3 residues within 4Å: Chain B: G.71, P.72, Q.73 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Q.73 Water bridges: B:G.71, B:N.74 SO4.19: 2 residues within 4Å: Chain B: C.150, E.151 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:E.151 SO4.28: 5 residues within 4Å: Chain C: H.34, I.35, G.36, H.38, H.209 7 PLIP interactions: 7 interactions with chain C Hydrogen bonds: C:G.36 Water bridges: C:H.209, C:H.209, C:H.209 Salt bridges: C:H.34, C:H.38, C:H.209 SO4.29: 3 residues within 4Å: Chain C: G.71, P.72, Q.73 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:Q.73 Water bridges: C:Q.73, C:N.74 SO4.30: 4 residues within 4Å: Chain C: C.150, E.151 Chain D: Y.132, R.185 2 PLIP interactions: 1 interactions with chain C, 1 interactions with chain D Hydrogen bonds: C:E.151 Salt bridges: D:R.185 SO4.41: 5 residues within 4Å: Chain A: G.138 Chain D: H.34, I.35, G.36, H.209 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:G.36 Salt bridges: D:H.34, D:H.209 SO4.42: 3 residues within 4Å: Chain D: G.71, P.72, Q.73 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:Q.73 Water bridges: D:N.74

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.11: 4 residues within 4Å: Chain A: Y.167, M.168, S.171, V.172 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:M.168 Water bridges: A:S.171, A:S.171

2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.20: 4 residues within 4Å: Chain B: L.163, M.168, S.171, V.172 2 PLIP interactions: 2 interactions with chain B Water bridges: B:S.171, B:N.175 PEG.40: 5 residues within 4Å: Chain C: R.134, N.145, R.146 Chain D: R.134, N.145 5 PLIP interactions: 3 interactions with chain C, 2 interactions with chain D Hydrogen bonds: C:R.134, C:N.145, C:R.146, D:R.134, D:N.145

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Aplin, A.E., Targeting TAZ-TEAD in minimal residual disease enhances the duration of targeted therapy in melanoma models. To Be Published

Release Date

2025-07-30

Peptides

Transcriptional enhancer factor TEF-1: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
AAA

B
BBB

C
CCC

D
DDD

Transcriptional enhancer factor TEF-1